Nick's pull request for a version that works on openmind

[nwatters01]

Summary of changes:

• Some cosmetic changes (variables names, formatting, updating README, etc.).
• Added display_interface.py. This introduces a new data table representing display updates. Each display update comes with several variables (timestamp, object positions, fixation cross size, task phase and closed-loop gaze position). These are put into a TimeIntervalsInterface as a dataframe.
• Added get_session_paths.py. This factors out a function to get all the paths to the different components of the data, for either openmind (our cluster) or globus. This function is passed a _REPO flag from the main run script, which can be either 'openmind' or 'globus' to reflect the two filesystems.
• Added timeseries_interfaces.py. This introduces two interfaces, the AudioInterface and the RewardInterface, that add audio and reward datastreams to the nwb file.

Also, apologies for somehow the filename changes not being tracked by git. Despite now several times re-trying to get git to track filename changes (using git mv to rename, deleting and re-branching, forking, etc.), I have no idea why some of the filename changes aren't being tracked.

This code all works great on openmind (with the potential exception of automatic uploading, but I'll try that soon). Specific things I'd love to get your input on:

• Are the interfaces in display_interface.py and timeseries_interfaces.py reasonable?

[CodyCBakerPhD]

@nwatters01 I resolved all the conflicts from this branch - can you double check for me and see if everything works as expected? If so, go ahead and merge since it all looks good to me

[CodyCBakerPhD]

Though one thing I noticed now is there seems to be a duplicated file on your branch

https://github.com/catalystneuro/jazayeri-lab-to-nwb/blob/nwatters/src/jazayeri_lab_to_nwb/watters/timeseries_interface.py

and

https://github.com/catalystneuro/jazayeri-lab-to-nwb/blob/nwatters/src/jazayeri_lab_to_nwb/watters/timeseries_interfaces.py

[nwatters01]

Everything works as expected on openmind, thanks for your help!

I'm going ahead and merging