Add basic documentation #19
Workflow file for this run
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name: Run all tests | |
on: | |
pull_request: | |
types: [synchronize, opened, reopened] | |
branches: | |
- main | |
schedule: | |
- cron: '0 5 * * 0' # once every Sunday at midnight ET | |
workflow_dispatch: | |
jobs: | |
run-all-tests: | |
name: ${{ matrix.name }} | |
runs-on: ${{ matrix.os }} | |
defaults: | |
run: | |
shell: bash | |
strategy: | |
fail-fast: false | |
matrix: | |
include: | |
- { name: linux-python3.8-minimum , requirements: minimum , python-ver: "3.8" , os: ubuntu-latest } | |
- { name: linux-python3.8 , requirements: pinned , python-ver: "3.8" , os: ubuntu-latest } | |
- { name: linux-python3.9 , requirements: pinned , python-ver: "3.9" , os: ubuntu-latest } | |
- { name: linux-python3.10 , requirements: pinned , python-ver: "3.10", os: ubuntu-latest } | |
- { name: linux-python3.11 , requirements: pinned , python-ver: "3.11", os: ubuntu-latest } | |
- { name: linux-python3.12 , requirements: pinned , python-ver: "3.12", os: ubuntu-latest } | |
- { name: linux-python3.12-upgraded , requirements: upgraded , python-ver: "3.12", os: ubuntu-latest } | |
- { name: windows-python3.8-minimum , requirements: minimum , python-ver: "3.8" , os: windows-latest } | |
- { name: windows-python3.8 , requirements: pinned , python-ver: "3.8" , os: windows-latest } | |
- { name: windows-python3.9 , requirements: pinned , python-ver: "3.9" , os: windows-latest } | |
- { name: windows-python3.10 , requirements: pinned , python-ver: "3.10", os: windows-latest } | |
- { name: windows-python3.11 , requirements: pinned , python-ver: "3.11", os: windows-latest } | |
- { name: windows-python3.12 , requirements: pinned , python-ver: "3.12", os: windows-latest } | |
- { name: windows-python3.12-upgraded , requirements: upgraded , python-ver: "3.12", os: windows-latest } | |
- { name: macos-python3.8-minimum , requirements: minimum , python-ver: "3.8" , os: macos-latest } | |
- { name: macos-python3.8 , requirements: pinned , python-ver: "3.8" , os: macos-latest } | |
- { name: macos-python3.9 , requirements: pinned , python-ver: "3.9" , os: macos-latest } | |
- { name: macos-python3.10 , requirements: pinned , python-ver: "3.10", os: macos-latest } | |
- { name: macos-python3.11 , requirements: pinned , python-ver: "3.11", os: macos-latest } | |
- { name: macos-python3.12 , requirements: pinned , python-ver: "3.12", os: macos-latest } | |
- { name: macos-python3.12-upgraded , requirements: upgraded , python-ver: "3.12", os: macos-latest } | |
steps: | |
- name: Cancel non-latest runs | |
uses: styfle/cancel-workflow-action@0.11.0 | |
with: | |
all_but_latest: true | |
access_token: ${{ github.token }} | |
- uses: actions/checkout@v3 | |
with: | |
submodules: 'recursive' | |
fetch-depth: 0 # fetch tags | |
- name: Set up Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-ver }} | |
- name: Install build dependencies | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip list | |
python -m pip check | |
- name: Install run requirements (minimum) | |
if: ${{ matrix.requirements == 'minimum' }} | |
run: | | |
python -m pip install -r requirements-min.txt -r requirements-dev.txt | |
python -m pip install -e . | |
- name: Install run requirements (pinned) | |
if: ${{ matrix.requirements == 'pinned' }} | |
run: | | |
python -m pip install -r requirements-dev.txt | |
python -m pip install -e . | |
- name: Install run requirements (upgraded) | |
if: ${{ matrix.requirements == 'upgraded' }} | |
run: | | |
python -m pip install -r requirements-dev.txt | |
python -m pip install -U -e . | |
- name: Run tests | |
run: | | |
pytest -v | |
- name: Build wheel and source distribution | |
run: | | |
python -m pip install --upgrade build | |
python -m build | |
ls -1 dist | |
- name: Test installation from a wheel (POSIX) | |
if: ${{ matrix.os != 'windows-latest' }} | |
run: | | |
python -m venv test-wheel-env | |
source test-wheel-env/bin/activate | |
python -m pip install dist/*-none-any.whl | |
python -c "import ndx_binned_spikes" | |
- name: Test installation from a wheel (windows) | |
if: ${{ matrix.os == 'windows-latest' }} | |
run: | | |
python -m venv test-wheel-env | |
test-wheel-env/Scripts/activate.bat | |
python -m pip install dist/*-none-any.whl | |
python -c "import ndx_binned_spikes" | |
run-all-tests-on-conda: | |
name: ${{ matrix.name }} | |
runs-on: ubuntu-latest | |
defaults: | |
run: | |
shell: bash -l {0} # needed for conda environment to work | |
strategy: | |
fail-fast: false | |
matrix: | |
include: | |
- { name: conda-linux-python3.8-minimum , requirements: minimum , python-ver: "3.8" , os: ubuntu-latest } | |
- { name: conda-linux-python3.8 , requirements: pinned , python-ver: "3.8" , os: ubuntu-latest } | |
- { name: conda-linux-python3.9 , requirements: pinned , python-ver: "3.9" , os: ubuntu-latest } | |
- { name: conda-linux-python3.10 , requirements: pinned , python-ver: "3.10", os: ubuntu-latest } | |
- { name: conda-linux-python3.11 , requirements: pinned , python-ver: "3.11", os: ubuntu-latest } | |
- { name: conda-linux-python3.12 , requirements: pinned , python-ver: "3.12", os: ubuntu-latest } | |
- { name: conda-linux-python3.12-upgraded , requirements: upgraded , python-ver: "3.12", os: ubuntu-latest } | |
steps: | |
- name: Cancel any previous incomplete runs | |
uses: styfle/cancel-workflow-action@0.11.0 | |
with: | |
access_token: ${{ github.token }} | |
- uses: actions/checkout@v3 | |
with: | |
submodules: 'recursive' | |
fetch-depth: 0 # fetch tags | |
- name: Set up Conda | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
auto-update-conda: true | |
auto-activate-base: true | |
activate-environment: true | |
python-version: ${{ matrix.python-ver }} | |
- name: Install build dependencies | |
run: | | |
conda config --set always_yes yes --set changeps1 no | |
conda info | |
conda config --show-sources | |
conda list --show-channel-urls | |
- name: Install run requirements (minimum) | |
if: ${{ matrix.requirements == 'minimum' }} | |
run: | | |
python -m pip install -r requirements-min.txt -r requirements-dev.txt | |
python -m pip install -e . | |
- name: Install run requirements (pinned) | |
if: ${{ matrix.requirements == 'pinned' }} | |
run: | | |
python -m pip install -r requirements-dev.txt | |
python -m pip install -e . | |
- name: Install run requirements (upgraded) | |
if: ${{ matrix.requirements == 'upgraded' }} | |
run: | | |
python -m pip install -r requirements-dev.txt | |
python -m pip install -U -e . | |
- name: Run tests | |
run: | | |
pytest -v | |
- name: Build wheel and source distribution | |
run: | | |
python -m pip install --upgrade build | |
python -m build | |
ls -1 dist | |
- name: Test installation from a wheel (POSIX) | |
run: | | |
python -m venv test-wheel-env | |
source test-wheel-env/bin/activate | |
python -m pip install dist/*-none-any.whl | |
python -c "import ndx_binned_spikes" |