Add tutorial for units and tests for writing unit region #31
Workflow file for this run
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| name: Run all tests | |
| on: | |
| pull_request: | |
| types: [synchronize, opened, reopened] | |
| branches: | |
| - main | |
| schedule: | |
| - cron: '0 5 * * 0' # once every Sunday at midnight ET | |
| workflow_dispatch: | |
| jobs: | |
| run-all-tests: | |
| name: ${{ matrix.name }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - { name: linux-python3.8-minimum , requirements: minimum , python-ver: "3.8" , os: ubuntu-latest } | |
| - { name: linux-python3.8 , requirements: pinned , python-ver: "3.8" , os: ubuntu-latest } | |
| - { name: linux-python3.9 , requirements: pinned , python-ver: "3.9" , os: ubuntu-latest } | |
| - { name: linux-python3.10 , requirements: pinned , python-ver: "3.10", os: ubuntu-latest } | |
| - { name: linux-python3.11 , requirements: pinned , python-ver: "3.11", os: ubuntu-latest } | |
| - { name: linux-python3.12 , requirements: pinned , python-ver: "3.12", os: ubuntu-latest } | |
| - { name: linux-python3.12-upgraded , requirements: upgraded , python-ver: "3.12", os: ubuntu-latest } | |
| - { name: windows-python3.8-minimum , requirements: minimum , python-ver: "3.8" , os: windows-latest } | |
| - { name: windows-python3.8 , requirements: pinned , python-ver: "3.8" , os: windows-latest } | |
| - { name: windows-python3.9 , requirements: pinned , python-ver: "3.9" , os: windows-latest } | |
| - { name: windows-python3.10 , requirements: pinned , python-ver: "3.10", os: windows-latest } | |
| - { name: windows-python3.11 , requirements: pinned , python-ver: "3.11", os: windows-latest } | |
| - { name: windows-python3.12 , requirements: pinned , python-ver: "3.12", os: windows-latest } | |
| - { name: windows-python3.12-upgraded , requirements: upgraded , python-ver: "3.12", os: windows-latest } | |
| - { name: macos-python3.8-minimum , requirements: minimum , python-ver: "3.8" , os: macos-latest } | |
| - { name: macos-python3.8 , requirements: pinned , python-ver: "3.8" , os: macos-latest } | |
| - { name: macos-python3.9 , requirements: pinned , python-ver: "3.9" , os: macos-latest } | |
| - { name: macos-python3.10 , requirements: pinned , python-ver: "3.10", os: macos-latest } | |
| - { name: macos-python3.11 , requirements: pinned , python-ver: "3.11", os: macos-latest } | |
| - { name: macos-python3.12 , requirements: pinned , python-ver: "3.12", os: macos-latest } | |
| - { name: macos-python3.12-upgraded , requirements: upgraded , python-ver: "3.12", os: macos-latest } | |
| steps: | |
| - name: Cancel non-latest runs | |
| uses: styfle/cancel-workflow-action@0.11.0 | |
| with: | |
| all_but_latest: true | |
| access_token: ${{ github.token }} | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: 'recursive' | |
| fetch-depth: 0 # fetch tags | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-ver }} | |
| - name: Install build dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip list | |
| python -m pip check | |
| - name: Install run requirements (minimum) | |
| if: ${{ matrix.requirements == 'minimum' }} | |
| run: | | |
| python -m pip install -r requirements-min.txt -r requirements-dev.txt | |
| python -m pip install -e . | |
| - name: Install run requirements (pinned) | |
| if: ${{ matrix.requirements == 'pinned' }} | |
| run: | | |
| python -m pip install -r requirements-dev.txt | |
| python -m pip install -e . | |
| - name: Install run requirements (upgraded) | |
| if: ${{ matrix.requirements == 'upgraded' }} | |
| run: | | |
| python -m pip install -r requirements-dev.txt | |
| python -m pip install -U -e . | |
| - name: Run tests | |
| run: | | |
| pytest -v | |
| - name: Build wheel and source distribution | |
| run: | | |
| python -m pip install --upgrade build | |
| python -m build | |
| ls -1 dist | |
| - name: Test installation from a wheel (POSIX) | |
| if: ${{ matrix.os != 'windows-latest' }} | |
| run: | | |
| python -m venv test-wheel-env | |
| source test-wheel-env/bin/activate | |
| python -m pip install dist/*-none-any.whl | |
| python -c "import ndx_binned_spikes" | |
| - name: Test installation from a wheel (windows) | |
| if: ${{ matrix.os == 'windows-latest' }} | |
| run: | | |
| python -m venv test-wheel-env | |
| test-wheel-env/Scripts/activate.bat | |
| python -m pip install dist/*-none-any.whl | |
| python -c "import ndx_binned_spikes" | |
| run-all-tests-on-conda: | |
| name: ${{ matrix.name }} | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} # needed for conda environment to work | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - { name: conda-linux-python3.8-minimum , requirements: minimum , python-ver: "3.8" , os: ubuntu-latest } | |
| - { name: conda-linux-python3.8 , requirements: pinned , python-ver: "3.8" , os: ubuntu-latest } | |
| - { name: conda-linux-python3.9 , requirements: pinned , python-ver: "3.9" , os: ubuntu-latest } | |
| - { name: conda-linux-python3.10 , requirements: pinned , python-ver: "3.10", os: ubuntu-latest } | |
| - { name: conda-linux-python3.11 , requirements: pinned , python-ver: "3.11", os: ubuntu-latest } | |
| - { name: conda-linux-python3.12 , requirements: pinned , python-ver: "3.12", os: ubuntu-latest } | |
| - { name: conda-linux-python3.12-upgraded , requirements: upgraded , python-ver: "3.12", os: ubuntu-latest } | |
| steps: | |
| - name: Cancel any previous incomplete runs | |
| uses: styfle/cancel-workflow-action@0.11.0 | |
| with: | |
| access_token: ${{ github.token }} | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: 'recursive' | |
| fetch-depth: 0 # fetch tags | |
| - name: Set up Conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: true | |
| activate-environment: true | |
| python-version: ${{ matrix.python-ver }} | |
| - name: Install build dependencies | |
| run: | | |
| conda config --set always_yes yes --set changeps1 no | |
| conda info | |
| conda config --show-sources | |
| conda list --show-channel-urls | |
| - name: Install run requirements (minimum) | |
| if: ${{ matrix.requirements == 'minimum' }} | |
| run: | | |
| python -m pip install -r requirements-min.txt -r requirements-dev.txt | |
| python -m pip install -e . | |
| - name: Install run requirements (pinned) | |
| if: ${{ matrix.requirements == 'pinned' }} | |
| run: | | |
| python -m pip install -r requirements-dev.txt | |
| python -m pip install -e . | |
| - name: Install run requirements (upgraded) | |
| if: ${{ matrix.requirements == 'upgraded' }} | |
| run: | | |
| python -m pip install -r requirements-dev.txt | |
| python -m pip install -U -e . | |
| - name: Run tests | |
| run: | | |
| pytest -v | |
| - name: Build wheel and source distribution | |
| run: | | |
| python -m pip install --upgrade build | |
| python -m build | |
| ls -1 dist | |
| - name: Test installation from a wheel (POSIX) | |
| run: | | |
| python -m venv test-wheel-env | |
| source test-wheel-env/bin/activate | |
| python -m pip install dist/*-none-any.whl | |
| python -c "import ndx_binned_spikes" |