[Enhancement IV] Add roi response series #81
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Run all tests | |
| on: | |
| pull_request: | |
| schedule: | |
| - cron: '0 5 * * 0' # once every Sunday at midnight ET | |
| workflow_dispatch: | |
| jobs: | |
| run-all-tests: | |
| name: ${{ matrix.name }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - { name: linux-python3.8-minimum , requirements: minimum , python-ver: "3.8" , os: ubuntu-latest } | |
| - { name: linux-python3.8 , requirements: pinned , python-ver: "3.8" , os: ubuntu-latest } | |
| - { name: linux-python3.9 , requirements: pinned , python-ver: "3.9" , os: ubuntu-latest } | |
| - { name: linux-python3.10 , requirements: pinned , python-ver: "3.10", os: ubuntu-latest } | |
| - { name: linux-python3.11 , requirements: pinned , python-ver: "3.11", os: ubuntu-latest } | |
| - { name: linux-python3.12 , requirements: pinned , python-ver: "3.12", os: ubuntu-latest } | |
| - { name: linux-python3.12-upgraded , requirements: upgraded , python-ver: "3.12", os: ubuntu-latest } | |
| - { name: windows-python3.8-minimum , requirements: minimum , python-ver: "3.8" , os: windows-latest } | |
| - { name: windows-python3.8 , requirements: pinned , python-ver: "3.8" , os: windows-latest } | |
| - { name: windows-python3.9 , requirements: pinned , python-ver: "3.9" , os: windows-latest } | |
| - { name: windows-python3.10 , requirements: pinned , python-ver: "3.10", os: windows-latest } | |
| - { name: windows-python3.11 , requirements: pinned , python-ver: "3.11", os: windows-latest } | |
| - { name: windows-python3.12 , requirements: pinned , python-ver: "3.12", os: windows-latest } | |
| - { name: windows-python3.12-upgraded , requirements: upgraded , python-ver: "3.12", os: windows-latest } | |
| - { name: macos-python3.8-minimum , requirements: minimum , python-ver: "3.8" , os: macos-latest } | |
| - { name: macos-python3.8 , requirements: pinned , python-ver: "3.8" , os: macos-latest } | |
| - { name: macos-python3.9 , requirements: pinned , python-ver: "3.9" , os: macos-latest } | |
| - { name: macos-python3.10 , requirements: pinned , python-ver: "3.10", os: macos-latest } | |
| - { name: macos-python3.11 , requirements: pinned , python-ver: "3.11", os: macos-latest } | |
| - { name: macos-python3.12 , requirements: pinned , python-ver: "3.12", os: macos-latest } | |
| - { name: macos-python3.12-upgraded , requirements: upgraded , python-ver: "3.12", os: macos-latest } | |
| steps: | |
| - name: Cancel non-latest runs | |
| uses: styfle/cancel-workflow-action@0.11.0 | |
| with: | |
| all_but_latest: true | |
| access_token: ${{ github.token }} | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: 'recursive' | |
| fetch-depth: 0 # fetch tags | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-ver }} | |
| - name: Install build dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip list | |
| python -m pip check | |
| - name: Install run requirements (minimum) | |
| if: ${{ matrix.requirements == 'minimum' }} | |
| run: | | |
| python -m pip install -r requirements-min.txt -r requirements-dev.txt | |
| python -m pip install -e . | |
| - name: Install run requirements (pinned) | |
| if: ${{ matrix.requirements == 'pinned' }} | |
| run: | | |
| python -m pip install -r requirements-dev.txt | |
| python -m pip install -e . | |
| - name: Install run requirements (upgraded) | |
| if: ${{ matrix.requirements == 'upgraded' }} | |
| run: | | |
| python -m pip install -r requirements-dev.txt | |
| python -m pip install -U -e . | |
| - name: Run tests | |
| run: | | |
| pytest -v | |
| - name: Build wheel and source distribution | |
| run: | | |
| python -m pip install --upgrade build | |
| python -m build | |
| ls -1 dist | |
| - name: Test installation from a wheel (POSIX) | |
| if: ${{ matrix.os != 'windows-latest' }} | |
| run: | | |
| python -m venv test-wheel-env | |
| source test-wheel-env/bin/activate | |
| python -m pip install dist/*-none-any.whl | |
| python -c "import ndx_microscopy" | |
| - name: Test installation from a wheel (windows) | |
| if: ${{ matrix.os == 'windows-latest' }} | |
| run: | | |
| python -m venv test-wheel-env | |
| test-wheel-env/Scripts/activate.bat | |
| python -m pip install dist/*-none-any.whl | |
| python -c "import ndx_microscopy" | |
| run-all-tests-on-conda: | |
| name: ${{ matrix.name }} | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} # needed for conda environment to work | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - { name: conda-linux-python3.8-minimum , requirements: minimum , python-ver: "3.8" , os: ubuntu-latest } | |
| - { name: conda-linux-python3.8 , requirements: pinned , python-ver: "3.8" , os: ubuntu-latest } | |
| - { name: conda-linux-python3.9 , requirements: pinned , python-ver: "3.9" , os: ubuntu-latest } | |
| - { name: conda-linux-python3.10 , requirements: pinned , python-ver: "3.10", os: ubuntu-latest } | |
| - { name: conda-linux-python3.11 , requirements: pinned , python-ver: "3.11", os: ubuntu-latest } | |
| - { name: conda-linux-python3.12 , requirements: pinned , python-ver: "3.12", os: ubuntu-latest } | |
| - { name: conda-linux-python3.12-upgraded , requirements: upgraded , python-ver: "3.12", os: ubuntu-latest } | |
| steps: | |
| - name: Cancel any previous incomplete runs | |
| uses: styfle/cancel-workflow-action@0.11.0 | |
| with: | |
| access_token: ${{ github.token }} | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: 'recursive' | |
| fetch-depth: 0 # fetch tags | |
| - name: Set up Conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: true | |
| activate-environment: true | |
| python-version: ${{ matrix.python-ver }} | |
| - name: Install build dependencies | |
| run: | | |
| conda config --set always_yes yes --set changeps1 no | |
| conda info | |
| conda config --show-sources | |
| conda list --show-channel-urls | |
| - name: Install run requirements (minimum) | |
| if: ${{ matrix.requirements == 'minimum' }} | |
| run: | | |
| python -m pip install -r requirements-min.txt -r requirements-dev.txt | |
| python -m pip install -e . | |
| - name: Install run requirements (pinned) | |
| if: ${{ matrix.requirements == 'pinned' }} | |
| run: | | |
| python -m pip install -r requirements-dev.txt | |
| python -m pip install -e . | |
| - name: Install run requirements (upgraded) | |
| if: ${{ matrix.requirements == 'upgraded' }} | |
| run: | | |
| python -m pip install -r requirements-dev.txt | |
| python -m pip install -U -e . | |
| - name: Run tests | |
| run: | | |
| pytest -v | |
| - name: Build wheel and source distribution | |
| run: | | |
| python -m pip install --upgrade build | |
| python -m build | |
| ls -1 dist | |
| - name: Test installation from a wheel (POSIX) | |
| run: | | |
| python -m venv test-wheel-env | |
| source test-wheel-env/bin/activate | |
| python -m pip install dist/*-none-any.whl | |
| python -c "import ndx_microscopy" |