[pre-commit.ci] auto fixes from pre-commit.com hooks

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catalystneuro · May 25, 2024 · 3eb6046 · 3eb6046
1 parent 6f7003b
commit 3eb6046
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Showing 5 changed files with 21 additions and 27 deletions.
diff --git a/spec/ndx-microscopy.extensions.yaml b/spec/ndx-microscopy.extensions.yaml
@@ -107,7 +107,7 @@ groups:
           - null
         doc: Link to the objective lens device.
         quantity: "?"
-  
+
   - neurodata_type_def: Microscopy
     neurodata_type_inc: LabMetaData
     doc: Extends LabMetaData to hold all Microscopy metadata.

diff --git a/src/pynwb/ndx_microscopy/__init__.py b/src/pynwb/ndx_microscopy/__init__.py
@@ -21,15 +21,16 @@
 load_namespaces(str(__spec_path))
 
 from ndx_ophys_devices import (
-    Indicator,
-    ExcitationSource,
-    Photodetector,
-    DichroicMirror,
     BandOpticalFilter,
+    DichroicMirror,
     EdgeOpticalFilter,
-    ObjectiveLens,
+    ExcitationSource,
+    Indicator,
     Microscope,
+    ObjectiveLens,
+    Photodetector,
 )
+
 Microscopy = get_class("Microscopy", extension_name)
 MicroscopyTable = get_class("MicroscopyTable", extension_name)
 ImagingSpace = get_class("ImagingSpace", extension_name)

diff --git a/src/pynwb/ndx_microscopy/testing/_mock.py b/src/pynwb/ndx_microscopy/testing/_mock.py
@@ -107,7 +107,7 @@ def mock_PlanarMicroscopySeries(
     planar_microscopy_series = ndx_microscopy.PlanarMicroscopySeries(
         name=series_name,
         description=description,
-        microscopy_table_region = microscopy_table_region,
+        microscopy_table_region=microscopy_table_region,
         data=series_data,
         unit=unit,
         conversion=conversion,
@@ -163,7 +163,7 @@ def mock_VariableDepthMicroscopySeries(
     variable_depth_microscopy_series = ndx_microscopy.VariableDepthMicroscopySeries(
         name=series_name,
         description=description,
-        microscopy_table_region = microscopy_table_region,
+        microscopy_table_region=microscopy_table_region,
         data=series_data,
         depth_per_frame_in_mm=series_depth_per_frame_in_mm,
         unit=unit,
@@ -213,7 +213,7 @@ def mock_VolumetricMicroscopySeries(
     volumetric_microscopy_series = ndx_microscopy.VolumetricMicroscopySeries(
         name=series_name,
         description=description,
-        microscopy_table_region = microscopy_table_region,
+        microscopy_table_region=microscopy_table_region,
         data=series_data,
         unit=unit,
         conversion=conversion,

diff --git a/src/pynwb/tests/test_constructors.py b/src/pynwb/tests/test_constructors.py
@@ -1,16 +1,15 @@
 """Test in-memory Python API constructors for ndx-microscopy extension."""
 
 import pytest
-
 from ndx_ophys_devices.testing import (
-    mock_Indicator,
-    mock_Photodetector,
-    mock_DichroicMirror,
     mock_BandOpticalFilter,
+    mock_DichroicMirror,
     mock_EdgeOpticalFilter,
-    mock_ObjectiveLens,
     mock_ExcitationSource,
+    mock_Indicator,
     mock_Microscope,
+    mock_ObjectiveLens,
+    mock_Photodetector,
 )
 
 from ndx_microscopy.testing import (
@@ -22,6 +21,8 @@
     mock_VolumetricImagingSpace,
     mock_VolumetricMicroscopySeries,
 )
+
+
 def test_constructor_microscopy():
     mock_Microscopy()
 
@@ -46,7 +47,7 @@ def test_constructor_planar_microscopy_series():
 def test_constructor_variable_depth_microscopy_series():
     imaging_space = mock_PlanarImagingSpace()
 
-    mock_VariableDepthMicroscopySeries(imaging_space=imaging_space    )
+    mock_VariableDepthMicroscopySeries(imaging_space=imaging_space)
 
 
 def test_constructor_volumetric_microscopy_series():

diff --git a/src/pynwb/tests/test_ndx_microscopy.py b/src/pynwb/tests/test_ndx_microscopy.py
@@ -44,29 +44,23 @@ def test_constructor_planar_microscopy_series():
     light_source = mock_ExcitationSource()
     imaging_space = mock_PlanarImagingSpace(microscope=microscope)
 
-    mock_PlanarMicroscopySeries(
-        microscope=microscope, light_source=light_source, imaging_space=imaging_space
-    )
+    mock_PlanarMicroscopySeries(microscope=microscope, light_source=light_source, imaging_space=imaging_space)
 
 
 def test_constructor_variable_depth_microscopy_series():
     microscope = mock_Microscope()
     light_source = mock_ExcitationSource()
     imaging_space = mock_PlanarImagingSpace(microscope=microscope)
 
-    mock_VariableDepthMicroscopySeries(
-        microscope=microscope, light_source=light_source, imaging_space=imaging_space
-    )
+    mock_VariableDepthMicroscopySeries(microscope=microscope, light_source=light_source, imaging_space=imaging_space)
 
 
 def test_constructor_volumetric_microscopy_series():
     microscope = mock_Microscope()
     light_source = mock_ExcitationSource()
     imaging_space = mock_PlanarImagingSpace(microscope=microscope)
 
-    mock_VolumetricMicroscopySeries(
-        microscope=microscope, light_source=light_source, imaging_space=imaging_space
-    )
+    mock_VolumetricMicroscopySeries(microscope=microscope, light_source=light_source, imaging_space=imaging_space)
 
 
 @pytest.fixture(scope="module")
@@ -77,9 +71,7 @@ def nwbfile_with_microscopy():
     light_source = mock_ExcitationSource()
     imaging_space = mock_PlanarImagingSpace(microscope=microscope)
 
-    mock_PlanarMicroscopySeries(
-        microscope=microscope, light_source=light_source, imaging_space=imaging_space
-    )
+    mock_PlanarMicroscopySeries(microscope=microscope, light_source=light_source, imaging_space=imaging_space)
 
     return nwbfile