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Dev Branch Testing #703

Dev Branch Testing

Dev Branch Testing #703

Workflow file for this run

name: Dev Branch Testing
on:
workflow_dispatch:
inputs:
python-versions:
description: 'List of Python versions to use in matrix, as JSON string'
required: true
type: string
workflow_call:
inputs:
python-versions:
description: 'List of Python versions to use in matrix, as JSON string'
required: true
type: string
secrets:
DANDI_API_KEY:
required: true
AWS_ACCESS_KEY_ID:
required: true
AWS_SECRET_ACCESS_KEY:
required: true
S3_GIN_BUCKET:
required: true
env:
DANDI_API_KEY: ${{ secrets.DANDI_API_KEY }}
jobs:
run:
name: Ubuntu tests with Python ${{ matrix.python-version }}
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: ${{ fromJson(inputs.python-versions) }}
steps:
- uses: actions/checkout@v4
- run: git fetch --prune --unshallow --tags
- name: Setup Python
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Global Setup
run: |
python -m pip install -U pip # Official recommended way
git config --global user.email "CI@example.com"
git config --global user.name "CI Almighty"
- name: Install Wine (For Plexon2 Tests)
uses: ./.github/actions/install-wine
with:
os: ${{ runner.os }}
- name: Install full requirements
run: pip install --no-cache-dir .[full,test]
- name: Dev gallery - ROIExtractors
run: pip install --no-cache-dir git+https://github.com/CatalystNeuro/roiextractors@main
- name: Dev gallery - DANDI
run: pip install --no-cache-dir git+https://github.com/dandi/dandi-cli@master
- name: Dev gallery - PyNWB
run: pip install --no-cache-dir git+https://github.com/NeurodataWithoutBorders/pynwb@dev
- name: Dev gallery - ProbeInterface
run: pip install --no-cache-dir git+https://github.com/spikeinterface/probeinterface@main
- name: Dev gallery - SpikeInterface
run: pip install --no-cache-dir "spikeinterface[test_core] @ git+https://github.com/spikeinterface/spikeinterface@main"
- name: Dev gallery - NEO
run: pip install --no-cache-dir git+https://github.com/NeuralEnsemble/python-neo@master
- name: Dev gallery - HDMF
run: pip install --no-cache-dir git+https://github.com/hdmf-dev/hdmf@dev
- name: Dev gallery - HDMF-ZARR
run : pip install --no-cache-dir git+https://github.com/hdmf-dev/hdmf-zarr@dev
- name: Display installed packages and their sources
run: |
pip list
- name: Prepare data for tests
uses: ./.github/actions/load-data
with:
aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }}
aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
s3-gin-bucket: ${{ secrets.S3_GIN_BUCKET }}
os: ${{ matrix.os }}
- name: Run full pytest
run: pytest -rsx -n auto --dist loadscope