Dev Branch Testing #707
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| name: Dev Branch Testing | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| python-versions: | |
| description: 'List of Python versions to use in matrix, as JSON string' | |
| required: true | |
| type: string | |
| workflow_call: | |
| inputs: | |
| python-versions: | |
| description: 'List of Python versions to use in matrix, as JSON string' | |
| required: true | |
| type: string | |
| secrets: | |
| DANDI_API_KEY: | |
| required: true | |
| AWS_ACCESS_KEY_ID: | |
| required: true | |
| AWS_SECRET_ACCESS_KEY: | |
| required: true | |
| S3_GIN_BUCKET: | |
| required: true | |
| env: | |
| DANDI_API_KEY: ${{ secrets.DANDI_API_KEY }} | |
| jobs: | |
| run: | |
| name: Ubuntu tests with Python ${{ matrix.python-version }} | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ${{ fromJson(inputs.python-versions) }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - run: git fetch --prune --unshallow --tags | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Global Setup | |
| run: | | |
| python -m pip install -U pip # Official recommended way | |
| git config --global user.email "CI@example.com" | |
| git config --global user.name "CI Almighty" | |
| - name: Install Wine (For Plexon2 Tests) | |
| uses: ./.github/actions/install-wine | |
| with: | |
| os: ${{ runner.os }} | |
| - name: Install full requirements | |
| run: pip install --no-cache-dir .[full,test] | |
| - name: Dev gallery - ROIExtractors | |
| run: pip install --no-cache-dir git+https://github.com/CatalystNeuro/roiextractors@main | |
| - name: Dev gallery - DANDI | |
| run: pip install --no-cache-dir git+https://github.com/dandi/dandi-cli@master | |
| - name: Dev gallery - PyNWB | |
| run: pip install --no-cache-dir git+https://github.com/NeurodataWithoutBorders/pynwb@dev | |
| - name: Dev gallery - ProbeInterface | |
| run: pip install --no-cache-dir git+https://github.com/spikeinterface/probeinterface@main | |
| - name: Dev gallery - SpikeInterface | |
| run: pip install --no-cache-dir "spikeinterface[test_core] @ git+https://github.com/spikeinterface/spikeinterface@main" | |
| - name: Dev gallery - NEO | |
| run: pip install --no-cache-dir git+https://github.com/NeuralEnsemble/python-neo@master | |
| - name: Dev gallery - HDMF | |
| run: pip install --no-cache-dir git+https://github.com/hdmf-dev/hdmf@dev | |
| - name: Dev gallery - HDMF-ZARR | |
| run : pip install --no-cache-dir git+https://github.com/hdmf-dev/hdmf-zarr@dev | |
| - name: Display installed packages and their sources | |
| run: | | |
| pip list | |
| - name: Prepare data for tests | |
| uses: ./.github/actions/load-data | |
| with: | |
| aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| s3-gin-bucket: ${{ secrets.S3_GIN_BUCKET }} | |
| os: ${{ matrix.os }} | |
| - name: Run full pytest | |
| run: pytest -rsx -n auto --dist loadscope |