update-testing-data #118
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: update-testing-data | |
on: | |
schedule: | |
- cron: "0 0 * * *" # daily | |
workflow_dispatch: | |
jobs: | |
run: | |
name: Update testing data on ${{ matrix.os }} | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ubuntu-latest, windows-latest, macos-latest] | |
steps: | |
- uses: s-weigand/setup-conda@v1 | |
- uses: actions/checkout@v2 | |
- run: git fetch --prune --unshallow --tags | |
- name: Setup Python 3.11 | |
uses: actions/setup-python@v2 | |
with: | |
python-version: 3.11 | |
- name: Global Setup | |
run: | | |
pip install -U pip | |
git config --global user.email "CI@example.com" | |
git config --global user.name "CI Almighty" | |
pip install wheel==0.41.2 # needed for scanimage | |
- name: Get ophys_testing_data current head hash | |
id: ophys | |
run: echo "::set-output name=HASH_OPHYS_DATASET::$(git ls-remote https://gin.g-node.org/CatalystNeuro/ophys_testing_data.git HEAD | cut -f1)" | |
- name: Cache ophys dataset - ${{ steps.ophys.outputs.HASH_OPHYS_DATASET }} | |
uses: actions/cache@v2 | |
id: cache-ophys-datasets | |
with: | |
path: ./ophys_testing_data | |
key: ophys-datasets-042023-${{ matrix.os }}-${{ steps.ophys.outputs.HASH_OPHYS_DATASET }} | |
- if: steps.cache-ophys-datasets.outputs.cache-hit == false | |
name: Install and configure AWS CLI | |
run: | | |
pip install awscli==1.29.56 | |
aws configure set aws_access_key_id ${{ secrets.AWS_ACCESS_KEY_ID }} | |
aws configure set aws_secret_access_key ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
- if: steps.cache-ophys-datasets.outputs.cache-hit == false | |
name: Download data from S3 | |
run: aws s3 cp --recursive s3://${{ secrets.S3_GIN_BUCKET }}//ophys_testing_data ./ophys_testing_data |