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refactored to trigger run-tests after update-testing-data
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pauladkisson committed Sep 28, 2023
1 parent 587865d commit 94ddfa0
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Showing 2 changed files with 7 additions and 16 deletions.
19 changes: 4 additions & 15 deletions .github/workflows/run-tests.yml
Original file line number Diff line number Diff line change
@@ -1,9 +1,10 @@
name: Full Tests
on:
schedule:
- cron: "0 0 * * *" # daily
pull_request:
workflow_dispatch:
workflow_run:
workflows: [update-testing-data]
types: [completed]

jobs:
run:
Expand Down Expand Up @@ -33,14 +34,13 @@ jobs:
- name: Install roiextractors with minimal requirements
run: pip install .[test]

- name: Run minimal tests
run: pytest tests/test_internals -n auto --dist loadscope

- name: Test full installation (-e needed for codecov report)
run: pip install -e .[full]



- name: Get ophys_testing_data current head hash
id: ophys
run: echo "::set-output name=HASH_OPHYS_DATASET::$(git ls-remote https://gin.g-node.org/CatalystNeuro/ophys_testing_data.git HEAD | cut -f1)"
Expand All @@ -50,17 +50,6 @@ jobs:
with:
path: ./ophys_testing_data
key: ophys-datasets-042023-${{ matrix.os }}-${{ steps.ophys.outputs.HASH_OPHYS_DATASET }}
# - if: steps.cache-ophys-datasets.outputs.cache-hit == false
# name: Install and configure AWS CLI
# run: |
# pip install awscli==1.29.56
# aws configure set aws_access_key_id ${{ secrets.AWS_ACCESS_KEY_ID }}
# aws configure set aws_secret_access_key ${{ secrets.AWS_SECRET_ACCESS_KEY }}
# - if: steps.cache-ophys-datasets.outputs.cache-hit == false
# name: Download data from S3
# run: aws s3 cp --recursive s3://${{ secrets.S3_GIN_BUCKET }}//ophys_testing_data ./ophys_testing_data



- name: Run full pytest with coverage
run: pytest -n auto --dist loadscope --cov=./ --cov-report xml:./codecov.xml
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4 changes: 3 additions & 1 deletion .github/workflows/update-testing-data.yml
Original file line number Diff line number Diff line change
@@ -1,5 +1,7 @@
name: Update testing data
name: update-testing-data
on:
schedule:
- cron: "0 0 * * *" # daily
workflow_dispatch:

jobs:
Expand Down

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