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@pauladkisson pauladkisson released this 16 Sep 20:11
· 13 commits to main since this release
v0.5.9
60c83a4
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Deprecations

  • Remove support for Python 3.8: PR #325

Features

  • Add InscopixImagingExtractor: #276
  • Updated testing workflows to include python 3.12, m1/intel macos, and dev tests to check neuroconv: PR #317
  • Added API documentation: #337
  • Optimized get_streams for BrukerTiffSinglePlaneImagingExtractor by introducing a static function get_available_channels which uses lazy parsing of the XML to fetch the available channels: #344

Fixes

  • Remove unnecessary scipy import error handling: #315
  • Fixed the typing returned by the InscopixImagingExtractor.get_dtype method: #326
  • Detect Changelog Updates was moved to its own dedicated workflow to avoid daily testing failures: #336
  • Fixed the Daily testing workflows by passing along the appropriate secrets: #340
  • Change the criteria of determining if Bruker data is volumetric #342
  • Fixes a bug that assumes the channel name is is on the tiff file for BrukerTiffSinglePlaneImagingExtractor #343
  • Including packaging explicitly in minimal requirements #347
  • Updated requirements to include cv2 and update dev testing locations for neuroconv: #357

Improvements

  • The Suite2PSegmentationExtractor now produces an error when a required sub-file is missin: #330
  • Added _image_mask initialization in BaseSegmentationExtractor; combined abstractmethods into top of file: #327
  • Optimize parsing of xml with lxml library for Burker extractors: #346
  • Protect sima and dill export #351
  • Improve error message when TiffImagingExtractor is not able to form memmap #353
  • Updated Check Docstrings workflow to use new github action: #354

Testing

  • Updated testing workflows to include python 3.12, m1/intel macos, and dev tests to check neuroconv: PR #317
  • Added daily testing workflow and fixed bug with python 3.12 by upgrading scanimage-tiff-reader version: PR #321
  • Remove wheel from requirements and move CI dependencies to test requirements PR #348
  • Use Spikeinterface instead of Spikeextractors for toy_example PR #349
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