input

catalystneuro · Nov 19, 2024 · 3e3c2a6 · 3e3c2a6
1 parent fd6335f
commit 3e3c2a6
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diff --git a/voluseg/VolusegProcessor.py b/voluseg/VolusegProcessor.py
@@ -27,6 +27,16 @@ def run(
         import lindi
         import voluseg
 
+        # Load input file
+        input = context.input
+        url = input.get_url()
+        assert url
+
+        if input.file_base_name.endswith('.lindi.json') or input.file_base_name.endswith('.lindi.tar'):
+            f = lindi.LindiH5pyFile.from_lindi_file(url)
+        else:
+            f = lindi.LindiH5pyFile.from_hdf5_file(url)
+
         # set and save parameters
         parameters0 = voluseg.parameter_dictionary()
         parameters0["dir_ants"] = "/ants-2.5.3/bin/"

diff --git a/voluseg/main.py b/voluseg/main.py
@@ -1,6 +1,7 @@
 from dendro.sdk import App
 from VolusegProcessor import VolusegProcessor
 
+
 app = App(
     app_name='voluseg',
     description='Voluseg processors'