CaImAn GUI and analysis toolbox is an interface for use with the CaImAn software toolbox: https://github.com/flatironinstitute/CaImAn
The CaImAn GUI toolbox provided here has a wiki (https://github.com/catubc/caiman_toolbox/wiki) which reviews the use of the GUI and several of the options.
There is also a Youtube video (https://www.youtube.com/watch?v=K2SAqQdRTtU) which shows a few of the steps involved in data processing using the GUI and CaImAn.
1.Install CaImAn as per instructions here: https://github.com/flatironinstitute/CaImAn.
2.Clone or download the GUI package from here: https://github.com/catubc/caiman_toolbox.
3.Install required python modules. Activate the caiman environment (as per instructions in CaImAn installation), and use conda to install the missing modules.
(caiman)...> conda install -c conda-forge opencv
(caiman)...> conda install -c conda-forge matplotlib
(caiman)...> conda install -c conda-forge tqdm
...
1.Start the CaImAn toolbox from the caiman environment:
(caiman)...> python main.py
See wiki page for complete options: https://github.com/catubc/caiman_toolbox/wiki.
For bugs, questions, requests and suggestions, please open an issue (see Tab above).