Flexres and modpairs
New features:
- flexible sidechains (multiple)
- derive new atom types from existing atom types
- modify interactions for specific pairs of atom types (similar functionality as
intnbp_r_eps
from autodock4) - default options are optimized for a reasonable compromise between search effort and convergence, the most important being
autostop
, which is enabled by default - import parameter file from autodock4 (DPF file)
- enumeration of ligand-receptor contacts by type of interaction (based on atom types), making it easy to automate post-docking analysis