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1. pytxdb pytxdb Public

   Package to create and query R's txdb-esque database with some additional features

   Python 3

2. create a refflat for picard rnaseqme... create a refflat for picard rnaseqmetrict from txdb

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   library(optparse)

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   option_list <- list( 

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     make_option(c("-g", "--gtf"), action="store", help="gtf file to use"),

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     make_option(c("-r", "--refflat"), action="store", help="refflat output"),

3. parse_pileup parse_pileup Public

   Parse pileup files, generate consensus fasta and calculate heteroplasmy per nucleotide

   Python 1

4. video_parser video_parser Public

   parse gut slice videos frame by frame into excel with object or movement tracking

   Python 3