Skip to content
@cellgeni

Cellular Genetics Informatics

Wellcome Sanger Institute

Pinned Loading

  1. STARsolo STARsolo Public

    wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq

    Shell 41 3

  2. reprocess_public_10x reprocess_public_10x Public

    Scripts to help get fastqs

    Shell 11 3

  3. c2l c2l Public

    Set of scripts to run cell2location on farm

    Jupyter Notebook

  4. cellatac cellatac Public

    Sanger Cellular Genetics single-cell ATAC-seq pipeline.

    Nextflow 10 6

  5. notebooks notebooks Public

    Cellular Genetics Informatics Notebooks

    HTML 19 12

  6. nf-cellbender nf-cellbender Public

    Nextflow implementation of Cellbender

    R

Repositories

Showing 10 of 73 repositories
  • cellxgene_curation Public
    cellgeni/cellxgene_curation’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 9, 2024
  • c2l Public

    Set of scripts to run cell2location on farm

    cellgeni/c2l’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 9, 2024
  • bulk_rnaseq Public

    Wrapper scripts for convenient processing of bulk RNA-seq experiments

    cellgeni/bulk_rnaseq’s past year of commit activity
    Shell 0 GPL-3.0 0 0 0 Updated Jul 8, 2024
  • nf-irods-to-fastq Public

    Get CRAMs from iRODS and convert them to FASTQ

    cellgeni/nf-irods-to-fastq’s past year of commit activity
    Nextflow 0 MIT 1 1 0 Updated Jul 8, 2024
  • nf-scautoqc Public

    Nextflow implementation of scAutoQC pipeline

    cellgeni/nf-scautoqc’s past year of commit activity
    Python 1 0 0 0 Updated Jul 6, 2024
  • nf-starsolo Public

    Our STARsolo repo but designed for Nextflow Tower

    cellgeni/nf-starsolo’s past year of commit activity
    Shell 0 0 0 0 Updated Jul 5, 2024
  • nf-cellbender Public

    Nextflow implementation of Cellbender

    cellgeni/nf-cellbender’s past year of commit activity
    R 0 0 0 0 Updated Jul 5, 2024
  • nf-fgwas Public

    Nextflow implementation of fGWAS

    cellgeni/nf-fgwas’s past year of commit activity
    C 0 0 0 0 Updated Jul 5, 2024
  • GBM-stuff Public

    Storing the scripts for use in the GBM project

    cellgeni/GBM-stuff’s past year of commit activity
    Java 1 0 1 0 Updated Jul 2, 2024
  • STARsolo Public

    wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq

    cellgeni/STARsolo’s past year of commit activity
    Shell 41 GPL-3.0 3 1 0 Updated Jun 26, 2024
View all repositories

Top languages

Loading…

Most used topics

Loading…