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radiomics_settings
radiomics_settings
 
 
settings/convolutional_filter_settings
settings/convolutional_filter_settings
 
 
EBIC_graphical_lasso.ipynb
EBIC_graphical_lasso.ipynb
 
 
README.md
README.md
 
 
Radiomics_network_based_clustering.ipynb
Radiomics_network_based_clustering.ipynb
 
 
SBG_autosegment_CT_Heart_OARs.ipynb
SBG_autosegment_CT_Heart_OARs.ipynb
 
 
ai_seg_inference_ex1.ipynb
ai_seg_inference_ex1.ipynb
 
 
analyzing_image_texture_using_pycerr.ipynb
analyzing_image_texture_using_pycerr.ipynb
 
 
animate_viewer.ipynb
animate_viewer.ipynb
 
 
auto_register_segment_MR_Pancreas_OARs.ipynb
auto_register_segment_MR_Pancreas_OARs.ipynb
 
 
autosegment_CT_HN_SMIT.ipynb
autosegment_CT_HN_SMIT.ipynb
 
 
autosegment_CT_HeadAndNeck_OARs.ipynb
autosegment_CT_HeadAndNeck_OARs.ipynb
 
 
autosegment_CT_HeartSubStruct_SMIT.ipynb
autosegment_CT_HeartSubStruct_SMIT.ipynb
 
 
autosegment_CT_Heart_OARs.ipynb
autosegment_CT_Heart_OARs.ipynb
 
 
autosegment_CT_Lung_GTV_SMIT.ipynb
autosegment_CT_Lung_GTV_SMIT.ipynb
 
 
autosegment_CT_Lung_OARs.ipynb
autosegment_CT_Lung_OARs.ipynb
 
 
autosegment_MR_Prostate_OARs.ipynb
autosegment_MR_Prostate_OARs.ipynb
 
 
autosegment_installer_CT_Heart_OARs.ipynb
autosegment_installer_CT_Heart_OARs.ipynb
 
 
autosegment_patient_outline.ipynb
autosegment_patient_outline.ipynb
 
 
batch_extract_radiomics_ex1.ipynb
batch_extract_radiomics_ex1.ipynb
 
 
batch_extract_radiomics_lung_ct.ipynb
batch_extract_radiomics_lung_ct.ipynb
 
 
batch_visualize_scan_seg_ex1.ipynb
batch_visualize_scan_seg_ex1.ipynb
 
 
copy_seg_to_scan.ipynb
copy_seg_to_scan.ipynb
 
 
download_data_from_xnat.ipynb
download_data_from_xnat.ipynb
 
 
image_filters_lung_ct.ipynb
image_filters_lung_ct.ipynb
 
 
load_visualize_scan_seg_ex1.ipynb
load_visualize_scan_seg_ex1.ipynb
 
 
n4_bias_field_correct.ipynb
n4_bias_field_correct.ipynb
 
 
xnat2pycerr.ipynb
xnat2pycerr.ipynb
 
 

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pyCERR-Notebooks

This repository provides notebooks for various use cases of pyCERR. These include

  • Organizing longitudinal, multi-modal image metadata
  • IBSI-1 and IBSI-2 compatible radiomics
  • RTDOSE dosimetry / DVHfeatures
  • Infering image segmentation, registration using AI models

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