pep8 style #334
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: cgat-apps | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| name: Ex1 (${{ matrix.python-version }}, ${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest", "macos-latest"] | |
| python-version: ["3.8", "3.9", "3.10"] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Cache conda | |
| uses: actions/cache@v1 | |
| env: | |
| # Increase this value to reset cache if conda/environments/cgat-core.yml has not changed | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: | |
| ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ | |
| hashFiles('conda/environments/cgat-apps.yml') }} | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| mamba-version: "*" | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge, bioconda, defaults | |
| channel-priority: true | |
| activate-environment: cgat-a | |
| environment-file: conda/environments/cgat-apps.yml | |
| - name: Show conda | |
| run: | | |
| conda info | |
| conda list | |
| - name: Test | |
| run: | | |
| pip install -e . | |
| pip install nose | |
| nosetests -v tests/test_style.py | |
| nosetests -v tests/test_scripts.py | |
| nosetests -v tests/test_import.py |