added docuement to track deprecation

cgat-developers · Apr 4, 2024 · cc1b71e · cc1b71e
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+#Scripts that have been deprecated:
+chain2psl
+bam2UniquePairs
+bam2libtype
+bam2peakshape
+bed2annotator
+bed2plot
+cat_tables
+cgat_fasta2cDNA
+combine_tables
+csv_interestion
+csv_rename
+csv_select
+csv_set
+medip_merge_intervals
+rndomize_lines
+transfac2transfac
+
+# Warnings for deprecation in the next release
+AGP.py (its used once in gff2gff to parse agp files)
+Blat.py
+gff2psl