Added text for Ch. 9

child-growth · Jun 23, 2022 · 3299f11 · 3299f11
2 parents 9c5e09e + 5b8e523
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diff --git a/01-quality-assurance.Rmd b/01-quality-assurance.Rmd
@@ -10,7 +10,7 @@ fontsize: 9pt
 
 \raggedright
 
-To check for outliers in length measurements, we plotted the distribution of raw length measurements by age and sex against different percentiles of the World Health Organization child growth standard distribution. The majority of observations fell within 3 standard deviations of the mean of the standard for males and females. There were certain cohorts, such as COHORTs Guatemala, that had a larger proportion of observations outside of 3 standard deviations from the mean. There was a higher variability of length measurements in the PROBIT, ZVITAMBO, and Keneba cohorts.  
+To check for outliers in length measurements, we plotted the distribution of raw length measurements by age and sex against different percentiles of the World Health Organization child growth standard distribution. The majority of observations fell within 3 standard deviations of the mean of the standard for males and females. There were certain cohorts, such as the Keneba cohort, that had a larger proportion of observations outside of 3 standard deviations from the mean. There was a higher variability of length measurements in the PROBIT, ZVITAMBO, and Keneba cohorts.  
 
 ```{r setup, include=FALSE}
 library(knitr)

diff --git a/03-secular-trends.Rmd b/03-secular-trends.Rmd
@@ -10,7 +10,7 @@ fontsize: 9pt
 
 \raggedright
 
-This study included cohorts that measured child growth from 1969 to 2014. To assess potential secular trends, we plotted the mean length-for-age Z-score (LAZ) over time. The plot below shows the individual observations from included studies over this range of years. Curves were fit to the data using generalized additive models, with the solid line fit through the median LAZ by birth year, and the dashed lines mark the 1st and 3rd quartiles. There does not appear to be a secular trend in LAZ. 
+This study included cohorts that measured child growth from 1987 to 2017. To assess potential secular trends, we plotted the mean length-for-age Z-score (LAZ) over time. The plot below shows the individual observations from included studies over this range of years. Curves were fit to the data using generalized additive models, with the solid line fit through the median LAZ by birth year, and the dashed lines mark the 1st and 3rd quartiles. There does not appear to be a secular trend in LAZ. 
 
 ```{r setup, include=FALSE}
 library(knitr)

diff --git a/05-DHS-ki-countries.Rmd b/05-DHS-ki-countries.Rmd
diff --git a/06-cohort-specific.Rmd → 05-cohort-specific.Rmd b/06-cohort-specific.Rmd → 05-cohort-specific.Rmd
@@ -90,18 +90,18 @@ include_graphics(paste0(fig_dir, "/stunting/fig-stunt-2-inc-cohort-asia-allage-p
 
 ### Africa
 ```{r lvel-africa, echo = FALSE}
-include_graphics(paste0(fig_dir, "/stunting/fig-length-2-length_vel-cohort-africa-allage-primary.png"))
+include_graphics(paste0(fig_dir, "/stunting/fig-stunt-2-vel-cohort-africa-allage-primary.png"))
 ```
 
 ### Latin America
 ```{r lvel-la, echo = FALSE}
-include_graphics(paste0(fig_dir, "/stunting/fig-length-2-length_vel-cohort-latamer-allage-primary.png"))
+include_graphics(paste0(fig_dir, "/stunting/fig-stunt-2-vel-cohort-latamer-allage-primary.png"))
 #include_graphics("figure-copies/fig-length-2-length_vel-cohort-latamer-allage-primary.png")
 ```
 
 ### South Asia
 ```{r lvel-sa, echo = FALSE}
-include_graphics(paste0(fig_dir, "/stunting/fig-length-2-length_vel-cohort-asia-allage-primary.png"))
+include_graphics(paste0(fig_dir, "/stunting/fig-stunt-2-vel-cohort-asia-allage-primary.png"))
 #include_graphics("figure-copies/fig-length-2-length_vel-cohort-asia-allage-primary.png")
 ```
 

diff --git a/07-excluding-PROBIT.Rmd → 06-excluding-PROBIT.Rmd b/07-excluding-PROBIT.Rmd → 06-excluding-PROBIT.Rmd
diff --git a/08-monthly-cohorts.Rmd → 07-monthly-cohorts.Rmd b/08-monthly-cohorts.Rmd → 07-monthly-cohorts.Rmd
@@ -36,7 +36,7 @@ include_graphics(paste0(fig_dir, "/stunting/fig-laz-2-mean-overall_region--allag
 ```
 
 <!-- ##################################################################################### -->
-## Age-specific severe stunting prevalence
+## Age-specific stunting prevalence
 
 ### All eligible cohorts
 
@@ -53,7 +53,7 @@ include_graphics(paste0(fig_dir, "/stunting/fig-stunt-2-prev-overall_region--all
 ```
 
 <!-- ##################################################################################### -->
-## Age-specific severe stunting incidence
+## Age-specific stunting incidence
 
 ### All eligible cohorts
 

diff --git a/09-fixed-effects.Rmd → 08-fixed-effects.Rmd b/09-fixed-effects.Rmd → 08-fixed-effects.Rmd
@@ -26,7 +26,6 @@ include_graphics(paste0(fig_dir, "/stunting/fig-stunt-2-prev-overall_region--all
 #include_graphics("figure-copies/fig-stunt-2-prev-overall_region--allage-fe.png")
 ```
 
-[ADD CAPTION]
 
 <!-- ##################################################################################### -->
 ## Age-specific incidence
@@ -44,7 +43,6 @@ include_graphics(paste0(fig_dir, "/stunting/fig-stunt-2-inc-overall_region--alla
 
 ```
 
-[ADD CAPTION]
 
 <!-- ##################################################################################### -->
 ## Changes in stunting status by age
@@ -61,7 +59,6 @@ include_graphics(paste0(fig_dir, "/stunting/fig-stunt-2-flow-overall--allage-fe.
 #include_graphics("figure-copies/fig-stunt-2-flow-overall--allage-fe.png")
 ```
 
-[ADD CAPTION] 
 
 
 <!-- ##################################################################################### -->
@@ -75,7 +72,7 @@ include_graphics(paste0(fig_dir, "/stunting/fig-stunt-2-vel-overall--allage-prim
 
 ### Fixed effects
 ```{r vel-fe, echo = FALSE} 
-include_graphics(paste0(fig_dir, "/stunting/fig-stunt-2-vel-overall--allage-primary.png")) 
+include_graphics(paste0(fig_dir, "/stunting/fig-stunt-2-vel-overall--allage-fe.png")) 
 #include_graphics("figure-copies/fig-stunt-2-vel-overall--allage-fe.png")
 ```