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MGF-file-splitter
MGF-file-splitter PublicExtract raw file specific spectra from an unassigned spectra file (.mgf) from Proteome Discoverer and generate new .mgf files specific to raw files
Python 1
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PTM-Site-Validator
PTM-Site-Validator PublicValidation of modified amino acid sites in peptide sequences by identifying immonium ions in the raw spectra (.mgf format)
Python 2
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PTM-Summarizer
PTM-Summarizer PublicSummarize post-translationally modified amino acid sites, peptides and proteins for Proteome Discoverer output
Python 1
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Uniqpepextractor
Uniqpepextractor PublicTryptic peptides unique to a protein/species from a list of multiple proteins/species fasta files can be extracted.
Python 1
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Variant-Proteome-DB-Generator
Variant-Proteome-DB-Generator PublicA python command line based script for extraction of annotated variants from VCF file, generating variant proteome database and to check the uniqueness of variant proteins from the database search.
Python 3
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Proteogenomic-Pipeline
Proteogenomic-Pipeline PublicPython packages for easy execution of proteogenomic workflow
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