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CAN (core and noncore) Disorder Protein retriever uses Homologene to find homologous proteins for human, fly, worm, yeast, and frog, and then queries those proteins in D2P2 database for disorder.

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chrhsu/CAN-Disorder-Protein-Retriever

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CAN-Disorder-Protein-Retriever

CAN (or Core And Noncore) Protein Retriever is a fast way to query and retrieve D2P2 disordered protein consensus data. It utilizes NCBI's Homologene to query the D2P2 database for disorder in homologous proteins.

We define "Core" as proteins that exist in the same subcellular location, and the proteins must be homologous between the eight model organisms (human, cow, mouse, zebrafish, fruit fly, worm, yeast, and frog). "NonCore" is defined as proteins that also exist in the same subcellular location as the "Core" proteins, but not all of the proteins exist or are homologous between the eight model organisms. [Add example here]

If any bugs or errors were encountered, please email chrhsu@uw.edu, and I will try to get back to you as soon as possible.

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CAN (core and noncore) Disorder Protein retriever uses Homologene to find homologous proteins for human, fly, worm, yeast, and frog, and then queries those proteins in D2P2 database for disorder.

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