updated FUNKI ref

christianholland · Mar 1, 2022 · 5c57d34 · 5c57d34
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diff --git a/bib/references.bib b/bib/references.bib
@@ -3567,13 +3567,16 @@ @article{holland_2021
 doi = {10.1002/hep4.1797},
 sciwheel-projects = {Thesis}
 }
-@misc{hernansaizballesteros2021,
-      title={FUNKI: Interactive functional footprint-based analysis of omics data}, 
-      author={Hernansaiz-Ballesteros, Rosa and Holland, Christian H. and Dugourd, Aurelien and Saez‐Rodriguez, Julio},
-      year={2021},
-      eprint={2109.05796},
-      archivePrefix={arXiv},
-      primaryClass={q-bio.GN}
+@article{hernansaizBallesteros2022,
+  doi = {10.1093/bioinformatics/btac055},
+  url = {https://doi.org/10.1093/bioinformatics/btac055},
+  year = {2022},
+  month = feb,
+  publisher = {Oxford University Press ({OUP})},
+  author={Hernansaiz-Ballesteros, Rosa and Holland, Christian H. and Dugourd, Aurelien and Saez‐Rodriguez, Julio},
+  editor = {Lenore Cowen},
+  title = {{FUNKI}: Interactive functional footprint-based analysis of omics data},
+  journal = {Bioinformatics}
 }
 @article{badiaimompel_2021,
 title = {{decoupleR}: Ensemble of computational methods to infer biological activities from omics data},

diff --git a/data/my_publications/my_publications.bib b/data/my_publications/my_publications.bib
@@ -118,15 +118,6 @@ @article{Holland2021
   title = {Transcriptomic Cross-Species Analysis of Chronic Liver Disease Reveals Consistent Regulation Between Humans and Mice},
   journal = {Hepatology Communications}
 },
-@article{hernansaizballesteros2021,
-  doi = {},
-  url = {},
-  title = {FUNKI: Interactive functional footprint-based analysis of omics data}, 
-  author = {Rosa Hernansaiz-Ballesteros and Christian H. Holland and Aurelien Dugourd and Julio Saez-Rodriguez},
-  year = {2021},
-  month = aug,
-  publisher = {},
-},
 @article{badiaimompel_2021,
 title = {{decoupleR}: Ensemble of computational methods to infer biological activities from omics data},
 author = {Pau Badia-i-Mompel and Jesús Vélez and Jana Braunger and Celina Geiss and Daniel Dimitrov and Sophia Müller-Dott and Petr Taus and Aurelien Dugourd and Christian H. Holland and Ricardo O. Ramirez Flores and Julio Saez-Rodriguez},
@@ -151,4 +142,15 @@ @article{Robrahn2022
 		            Salmonella
 		            Typhimurium infection},
   journal = {Infection and Immunity}
+},
+@article{HernansaizBallesteros2022,
+  doi = {10.1093/bioinformatics/btac055},
+  url = {https://doi.org/10.1093/bioinformatics/btac055},
+  year = {2022},
+  month = feb,
+  publisher = {Oxford University Press ({OUP})},
+  author = {Rosa Hernansaiz-Ballesteros and Christian H. Holland and Aurelien Dugourd and Julio Saez-Rodriguez},
+  editor = {Lenore Cowen},
+  title = {{FUNKI}: Interactive functional footprint-based analysis of omics data},
+  journal = {Bioinformatics}
 }
diff --git a/prelims/preface.Rmd b/prelims/preface.Rmd
@@ -77,21 +77,23 @@ _Infection and Immunity._ [-@robrahn_2022]. DOI:
 
 9. Hernansaiz-Ballesteros R, **Holland CH**, Dugourd A, Saez-Rodriguez J. 
 "FUNKI: Interactive functional footprint-based analysis of omics data". 
-_arXiv_. [-@hernansaizballesteros2021]. ID: 
-[arXiv:2109.05796](https://arxiv.org/abs/2109.05796).
-
-10. Badia-i-Mompel P, Vélez J, Braunger J, Geiss C, Dimitrov D, Müller-Dott S, 
+_Bioinformatics_. [-@hernansaizBallesteros2022]. DOI: 
+[10.1093/bioinformatics/btac055](https://doi.org/10.1093/bioinformatics/btac055).
+
+10. Schneider KM^\*^, Mohs A^\*^, Gui W, Galvez EJC, Candels LS, Hoenicke L, 
+Muthukumarasamy U, **Holland CH**, Elfers C, Kilic K, Schneider CV, Strnad P, 
+Wirtz TH, Marschall HU, Latz E, Lelouvier B, Saez-Rodriguez J, de Vos W, 
+Strowig T, Trebicka J, Trautwein C. "Imbalanced gut microbiota fuels HCC 
+development by shaping the hepatic inflammatory microenvironment." 
+_Under review at Nature Communications_. 2022. 
+DOI: [xxx](xxx).
+
+11. Badia-i-Mompel P, Vélez J, Braunger J, Geiss C, Dimitrov D, Müller-Dott S, 
 Taus P, Dugourd A, **Holland CH**, RO Ramirez Flores, Saez-Rodriguez J. 
 "decoupleR: Ensemble of computational methods to infer biological activities 
 from omics data". _bioRxiv._ [-@badiaimompel_2021]. DOI: 
 [10.1101/2021.11.04.467271](https://doi.org/10.1101/2021.11.04.467271).
 
-11. Schneider KM^\*^, Mohs A^\*^, Gui W, Galvez EJC, Candels LS, **Holland CH**, 
-Elfers C, Kilic K, Schneider CV, Strnad P, Wirtz TH, Marschall HU, Latz E, 
-Lelouvier B, Saez-Rodriguez J, de Vos W, Strowig T, Trebicka J, Trautwein C. 
-"Imbalanced gut microbiota fuels HCC development by shaping the hepatic 
-inflammatory microenvironment." _Under review at Nature Communications_. 2021.
-
 ^\*^_Shared first authorship_ 
 ^#^_Shared senior authorship_