'HuBMAP' data portal (https://portal.hubmapconsortium.org/) provides
an open, global bio-molecular atlas of the human body at the cellular
level. HuBMAPR package provides an alternative interface to access the
data exploration and file retrieval via R.
HuBMAPR is a R package available in Bioconductor version 3.19 and
later. You can install HuBMAPR by using the following commands in R
session from Bioconductor:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HuBMAPR")
## Check Bioconductor installation
BiocManager::valid()Additionally, you can install development version from GitHub:
BiocManager::install("christinehou11/HuBMAPR")View the article Explore Human BioMelecular Atlas Program Data Portal.
Pre-print: https://www.biorxiv.org/content/10.1101/2024.09.26.615227v1