Note: FrogCap is currently metamorphosing into AmphiCap, a sequence capture probe set for all amphibians, with 25,000 additional markers (AHE markers, BUSCO markers). contact me for more information!
Welcome to the FrogCap GitHub repository! Please visit frogcap.com for the probe set, data analysis pipeline, and tutorials. Please cite the following preprint (soon to be published manuscript) if you use any of these resources.
Further note, please use the new R package PhyloProcessR and PhyloConfigR for updated data analysis pipelines:
https://github.com/chutter/PhyloProcessR
https://github.com/chutter/PhyloConfigR
Hutter C.R., Cobb K.A., Portik D., Travers S., Wood Jr. P.L., and Brown R.M. (2021). FrogCap: A modular sequence capture probe set for phylogenomics and population genetics for Anurans, assessed across multiple phylogenetic scales. Molecular Ecology Resources. doi: 10.1111/1755-0998.13517