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cindyyeh/README.md

~ Hi! ~

My name is Cindy Yeh and I am a computational biologist at GigaGen, Inc.

  • 😄 Pronouns: she/her
  • 🦂 Background: I grew up in New Mexico.
  • 🌲 Training: As an undergraduate at NMSU, I studied muscle degeneration and transdifferentiation in the weakly electric fish Sternopygus macrurus. I then spent an amazing 6 years in Seattle obtaining my PhD in Genome Sciences at the University of Washington where I studied natural allelic variation in the budding yeast Saccharomyces cerevisiae.
  • 🧬 Profession: I previously worked at Ultima Genomics as a scientist where I developed assays and analysis pipelines for Ultima's emerging iteration of short-read sequencers. This was a hybrid wet/dry lab role, but I shifted to a fully computational role when I started my position at GigaGen. I sometimes miss wet lab but there's so much to learn in computational biology!
  • 🔭 Interests: I love learning about yeast genomics, evolution, and neat bioinformatics tricks
  • 🌱 What I'm learning now: I’m currently learning about LLMs and how to create Shiny apps. Hopefully I can make my toy app available on my repo here!
  • 👯 Fun fact: I worked alongside the godfather of tie dye, Paul Kenney. He's a clever chemist!

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  1. dunhamlab/PacRAT dunhamlab/PacRAT Public

    Improving long-read barcode-variant mapping using multiple sequence alignment.

    Python 7 5

  2. barseq barseq Public

    Analyzing barseq data retrieved from Illumina sequencing

    Python 1

  3. dunhamlab/SUL1_natural_variants dunhamlab/SUL1_natural_variants Public

    scripts used for analyzing natural variant competition of SUL1

    Python 1