Optimized and Adaptive Weighted-K (OAWK)

Consensus-generating tool from aligned multi-FASTA files.

REPLICATION

To download OAWK in a Linux system, please run:

git clone https://github.com/cobilab/OAWK.git
cd src
chmod +x *.sh

To generate a consensus the following command should be executed:

python3 OAWK.py -i input.fa -v name_virus -k values_of_k -b value_of_b

To evaluate the consensus generated for one file, given a reference, please type:

./OAWK_evaluation.sh --reconstructed reconstructed.fa --reference reference.fa --output results 

CITATION

On using this software/method please cite:

• pending

ISSUES

For any issue let us know at issues link.

LICENSE

GPL v3.

For more information:

http://www.gnu.org/licenses/gpl-3.0.html