Merge pull request #220 from cokelaer/june_2022_cleanup

New uniprot API integraton
cokelaer · Jul 1, 2022 · 84d2eb2 · 84d2eb2
2 parents ec0023f + 8236c2a
commit 84d2eb2
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diff --git a/README.rst b/README.rst
@@ -176,6 +176,7 @@ Changelog
 ========= ====================================================================
 Version   Description
 ========= ====================================================================
+1.10.0    * Update uniprot to use the new API (june 2022)
 1.9.0     * Update unichem to reflect new API
 1.8.4     * biomodels. Fix #208
           * KEGG: fixed #204 #202 and #203

diff --git a/setup.py b/setup.py
@@ -4,7 +4,7 @@
 
 
 _MAJOR               = 1
-_MINOR               = 9
+_MINOR               = 10
 _MICRO               = 0
 version              = '%d.%d.%d' % (_MAJOR, _MINOR, _MICRO)
 release              = '%d.%d' % (_MAJOR, _MINOR)

diff --git a/src/bioservices/kegg.py b/src/bioservices/kegg.py
@@ -1354,29 +1354,30 @@ def _parse(self, res):
                 output[key] = data
             # strip only: expecting a single line (string)
             elif key in [
-                "POSITION",
+                "ANNOTATION",
+                "CATEGORY",
+                "CLASS",
+                "COMPOSITION",
+                "CREATED",
+                "DATA_SOURCE",
+                "DEFINITION",
                 "DESCRIPTION",
                 "ENTRY",
-                "ORGANISM",
-                "CLASS",
-                "SYMBOL",
+                "EFFICACY",
+                "EQUATION",
                 "FORMULA",
                 "KEYWORDS",
-                "CATEGORY",
-                "ANNOTATION",
-                "DATA_SOURCE",
+                "HISTORY",
                 "MASS",
-                "COMPOSITION",
-                "STRUCTURE",
+                "ORGANISM",
                 "ORG_CODE",
-                "CREATED",
-                "DEFINITION",
+                "POSITION",
+                "RCLASS",
                 "KO_PATHWAY",
-                "EQUATION",
+                "SYMBOL",
+                "STRUCTURE",
                 "TYPE",
-                "RCLASS",
                 "SYSNAME",
-                "HISTORY",
                 "REL_PATHWAY",
             ]:
                 # get rid of \n