Merge branch 'main' of github.com:cokelaer/bioservices into main

cokelaer · Oct 1, 2022 · e8391e2 · e8391e2
2 parents 73058b1 + 6bb04cf
commit e8391e2
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Showing 2 changed files with 6 additions and 3 deletions.
diff --git a/src/bioservices/quickgo.py b/src/bioservices/quickgo.py
@@ -87,7 +87,10 @@ def go_search(self, query, limit=600, page=1):
  return res
 
  def get_go_terms(self, query, max_number_of_pages=None):
- """Get information on all terms and page through the result"""
+ """Get information on all terms and page through the result
+ 
+ :param str query: terms as string of comma seperated values
+ """
 
  query = query.replace(":", "%3A")
  query = query.replace(",", "%2C")

diff --git a/src/bioservices/uniprot.py b/src/bioservices/uniprot.py
@@ -821,11 +821,11 @@ def get_df(self, entries, nChunk=100, organism=None, limit=10):
  if isinstance(output, type(None)):
  output = df.copy()
  else:
- output = output.append(df, ignore_index=True)
+ # output = output.append(df, ignore_index=True)
+ output = pd.concat([output, df], ignore_index=True)
 
  # you may end up with duplicated...
  output.drop_duplicates(inplace=True)
-
  # Sequences are splitted into chunks of 10 characters. let us remove
  # the spaces:
  if "sequence" in output.columns: