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  1. epiScanpy epiScanpy Public

    Episcanpy: Epigenomics Single Cell Analysis in Python

    Python 141 32

  2. epiAneufinder epiAneufinder Public

    R package to detect breakpoints and assign somies to scATAC-seq data

    HTML 33 8

Repositories

Showing 10 of 13 repositories
  • epiScanpy Public

    Episcanpy: Epigenomics Single Cell Analysis in Python

    colomemaria/epiScanpy’s past year of commit activity
    Python 141 BSD-3-Clause 32 25 2 Updated Dec 5, 2024
  • community-paper Public
    colomemaria/community-paper’s past year of commit activity
    Jupyter Notebook 1 0 3 0 Updated Nov 25, 2024
  • benchmark_scrnaseq_cnv_callers Public

    Analysis pipeline used to benchmark scRNA-seq copy number variant callers

    colomemaria/benchmark_scrnaseq_cnv_callers’s past year of commit activity
    R 4 MIT 0 0 0 Updated Nov 18, 2024
  • epiAneufinder Public

    R package to detect breakpoints and assign somies to scATAC-seq data

    colomemaria/epiAneufinder’s past year of commit activity
    HTML 33 GPL-3.0 8 11 1 Updated Sep 10, 2024
  • community Public Forked from SoloveyMaria/community

    cell-cell communication algorithm

    colomemaria/community’s past year of commit activity
    R 0 MIT 4 0 0 Updated Jun 28, 2024
  • scSwitchFilter Public
    colomemaria/scSwitchFilter’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 11, 2024
  • ARID1A_follicular_lymphoma Public
    colomemaria/ARID1A_follicular_lymphoma’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Dec 11, 2023
  • epiAneufinder_analyses Public

    Scripts and notebooks describing the analyses and plots that included in the epiAneufinder publication

    colomemaria/epiAneufinder_analyses’s past year of commit activity
    Jupyter Notebook 2 GPL-3.0 0 0 0 Updated Nov 9, 2023
  • scmoib-package Public
    colomemaria/scmoib-package’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 27, 2022
  • episcanpy_doc Public
    colomemaria/episcanpy_doc’s past year of commit activity
    0 0 0 0 Updated Sep 5, 2021
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