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Allow users to define and publish their own BOM in Mill #4155

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alexarchambault
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Based on both #4145 and #4154

This changes the way transitive dependencies, but also transitive BOM
dependencies and dependency management, are passed to coursier.

Before this commit, Mill was walking its own module graph, and
dependencies / BOM dependencies / dep management were manually aggregated
beforehand. During dependency resolution, coursier also does such
aggregations.

Having both Mill and coursier handle that concern could lead to discrepancies.
So this commit passes non-processed dependencies / BOM dependencies /
dep management as-is to coursier, and lets coursier handle / compose
those.
@alexarchambault
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Will expand the PR summary later

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