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@combogenomics

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Florence Computational Biology Group

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  1. medusa medusa Public

    A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.

    Java 42 15

  2. DuctApe DuctApe Public

    Analyze and link genomics and phenomics experiments

    Python 9 4

  3. medusa-webapp medusa-webapp Public

    Medusa web server

    Python 1 2

  4. contiguator-webapp contiguator-webapp Public

    CONTIGuator web server

    Python 2 2

Repositories

Showing 10 of 24 repositories
  • MeStudio Public

    A computational tool for extracting and analyzing methylation features from SMRT reads

    combogenomics/MeStudio’s past year of commit activity
    C 4 1 4 0 Updated Jan 11, 2024
  • Squid Public
    combogenomics/Squid’s past year of commit activity
    C 2 2 0 0 Updated Jan 8, 2024
  • CONTIGuator Public

    Bacterial genomes finishing tool for structural insights on draft genomes

    combogenomics/CONTIGuator’s past year of commit activity
    Python 24 GPL-3.0 7 0 0 Updated Sep 22, 2023
  • medusa2 Public

    medusa2

    combogenomics/medusa2’s past year of commit activity
    Python 2 0 0 0 Updated Jun 15, 2023
  • medusa2-webapp Public

    Medusa2 web server

    combogenomics/medusa2-webapp’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 28, 2023
  • scripts_for_the_people Public

    Commonly used scripts for basic computational biology tasks

    combogenomics/scripts_for_the_people’s past year of commit activity
    Python 1 0 0 0 Updated Mar 9, 2023
  • MetRob015 Public

    Raw data and code related to the manuscript "Metabolic robustness to growth temperature of cold adapted bacterium"

    combogenomics/MetRob015’s past year of commit activity
    R 0 0 0 0 Updated Sep 23, 2022
  • DuctApe Public

    Analyze and link genomics and phenomics experiments

    combogenomics/DuctApe’s past year of commit activity
    Python 9 4 5 0 Updated Jul 18, 2022
  • MicrobialLoop Public

    Codes for the modelling of P. tricornutum and P. haloplanktis co-culture

    combogenomics/MicrobialLoop’s past year of commit activity
    MATLAB 0 0 0 0 Updated Mar 22, 2021
  • SyntheticMicrobialLoop Public
    combogenomics/SyntheticMicrobialLoop’s past year of commit activity
    MATLAB 0 0 0 0 Updated Mar 12, 2021
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