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add general interactive visualizaiton
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# General Interactive Visualization | ||
This tutorial outlines how to perform interactive remove visualization on a general cluster. | ||
Using remote visualization allows for the visualization of much larger simulations interactively, without the need for Paraview's batch mode | ||
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## Step 1 - Setting up your Environment | ||
Begin by downloading the .zip file here (https://gatech.box.com/s/1diud4lgequvuie5fg2ac6hcvoelndu5). | ||
This file contains two things | ||
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- A bash script to automate the job submission process and provide instructions for remote connection. | ||
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- A prebuilt Paraview 5.11 binary | ||
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Place the file `remoteParview.zip` in you scratch direction on Phoenix and unzip is using `unzip remoteParaview.zip`. | ||
Enter the new directory `remoteParaview` and run `tar -xvf ParaView-5.11.0-egl-MPI-Linux-Python3.9-x86_64.tar.gz` to decompress the compiled binary. | ||
Now that you have the binary on Phoenix, you'll need to download Paraview 5.11 on your local machine. | ||
Paraview binaries can be downloaded here (https://www.paraview.org/download/). | ||
Make sure to select `v5.11` from the version drop down bar and install a `5.11.0` version of Paraview. | ||
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## Step 2 - Customizing the Bash Script | ||
While all of the options for the bash script could be passed as command line arguments, it saves time to hard code certain options that are unlikely to change. | ||
The following is a list of required and suggested updates to make to `remote-paraview-server`. | ||
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- (Optional) Update line 4 to customize the job name that will show up in the scheduler | ||
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- (Required) Update line 6 to point towards the location of you Paraview bin directory | ||
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- (Required) Update line 50 to reflect the number of GPUs per node you'll use | ||
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- (Optional) Update line 51 to reflect the default account you'll use to run Paraview jobs | ||
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- (Optional) Update line 52 to reflect the default wall time requested for your job | ||
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- (Required) Update lines 128 through 140 to match the job scheduler on the machine you are using. | ||
Information on how to do this can be found in the documentation for the machine you're using. | ||
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## Step 3 - Running remote-paraview-server | ||
Before running `remote-paraview-server` for the first time, you'll need to update its permissions by running `chmod u+x remote-paraview-server` in your command line. | ||
Once this has been done, you can run `./remote-paraview-server` with the following options: | ||
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- `--account` specifies the charge account to use for the job. | ||
If you updated line 51 of `remote-paraview-server` to reflect a default account, this option is optional, otherwise it is required. | ||
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- `--nodes` specifies the number of nodes to request (default 1) | ||
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- `--mem` specifies the memory per node to request (default is to request all memory) | ||
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- `--gres` specifies the GPU resources to request. | ||
These instructions have only been verified to work with `--gres gpu:V100:2`. | ||
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- `--time` specifies the time limit for your job. | ||
This option is optional and defaults to whatever is set on line 52 of `remote-paraview-server`. | ||
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Once you run `./remote-paraview-server <options>`, it'll take a bit to start up. | ||
In the meantime, you'll see the below message: | ||
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``` | ||
Submitted batch job <job #> | ||
Waiting for ParaView server to start. This may take several minutes ... | ||
``` | ||
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When it's done initializing, you should see a dialogue with some recommended next steps numbered 1-4. | ||
Below is a slightly altered version of that dialogue: | ||
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1) Create the appropriate port forwarding for your local ParaView session to connect with. | ||
* On your local machine, run the following from a terminal where `nodeIdentifier` is the remote node running the ParaView server process (given in the output of the batch script) and `SystemIdentifier` is the name of the PACE system (however this is configured with your `.ssh/config`). | ||
* This terminal session must not be killed for the duration of your ParaView session as it maintains the port forwarding. | ||
* `ssh -L 8722:<nodeIdentifier>:53723 <SystemIdentifier>` | ||
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2) Once you have `Paraview5.11.0` open on your machine, select `file -> Connect..` to open the remote connection dialogue box. | ||
* If you've already set up the pace connection, simply double-click the existing configuration. | ||
* If you have not yet set up the pace connection, click `Add Server`. | ||
This will bring up a new dialogue box where you can specify a configuration name and set the `Port` to 8722. | ||
Once this is done, click `configure` and then `save` on the next dialogue box. |