v4.0.0

Fully refactored and drastically more user-friendly version of MS²PIP:

• More modular Python API
• One consolidated command-line interface with subcommands
• Support for all file formats readable by psm_utils
• Support for MGF, mzML, and Bruker raw spectrum files
• Support for ProForma 2.0 peptide notation (no modification configuration required anymore)
• Support for multiple peptides/PSMs per spectrum
• Detailed documentation on ms2pip.readthedocs.io
• ...

v4.0.0-dev14

Full Changelog: v4.0.0-dev13...v4.0.0-dev14

v4.0.0-dev13

Full Changelog: v4.0.0-dev12...v4.0.0-dev13

v4.0.0-dev12

Full Changelog: v4.0.0-dev11...v4.0.0-dev12

v4.0.0-dev11

Full Changelog: v4.0.0-dev10...v4.0.0-dev11

v4.0.0-dev10

Full Changelog: v4.0.0-dev9...v4.0.0-dev10

v4.0.0-dev9

Full Changelog: v4.0.0-dev8...v4.0.0-dev9

v4.0.0-dev8

Full Changelog: v4.0.0-dev7...v4.0.0-dev8

v4.0.0-dev7

Full Changelog: v4.0.0-dev6...v4.0.0-dev7

v3.13.0

Added

• New timsTOF 2024 model added (now alias for timsTOF) by @ArthurDeclercq in #211

Full Changelog: v3.12.0...v3.13.0