-
Notifications
You must be signed in to change notification settings - Fork 22
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Add BCSS Dataset #156
Add BCSS Dataset #156
Conversation
@constantinpape This one's ready to go. Let me know how it looks. |
self, | ||
labels: np.ndarray | ||
) -> np.ndarray: | ||
"""Returns the transformed labels (use-case for SAM) |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
For the same use-case we should use connected components (skimage.measure.label
) instead of just relabeling.
This way we can separate disconnected pieces, and have an instance segmentation, which will be better for SAM.
(Since this is just the sample script it's not important to update this here, but please keep it in mind for SAM.)
(WIP) Implementation for the Breast Cancer Semantic Segmentation dataset.
(TODOs):
need to fix data download usingwarning raisedgdown
(download limit for folders is upto 50 files, need to take care of that)