fix

bidsmreye/configuration.py

@@ -89,11 +89,11 @@ def __attrs_post_init__(self) -> None:
         )
         log.debug(f"Layout in:\n{layout_in.root}")
 
-        value = layout_in.get(return_type="id", target="space", datatype="func")
+        value = layout_in.get(return_type="id", target="subject", datatype="func")
         if not value:
             raise RuntimeError(
                 f"Input dataset {layout_in.root} does not have "
-                f"any data to process with a space entity.\n"
+                f"any data to process.\n"
                 "Is your dataset a BIDS derivative dataset?\n"
                 "Check the FAQ for more information: "
                 "https://bidsmreye.readthedocs.io/en/latest/FAQ.html"
@@ -149,7 +149,7 @@ def check_argument(self, attribute: str, layout_in: BIDSLayout) -> Config:
         setattr(self, attribute, value)
 
         # run and space can be empty if their entity are not used
-        if attribute not in ["run"] and not getattr(self, attribute):
+        if attribute not in ["run", "space"] and not getattr(self, attribute):
             raise RuntimeError(f"No {attribute} found in {self.input_dir}")
 
         return self

tests/test_quality_control.py

@@ -135,11 +135,9 @@ def test_quality_control_output():
     quality_control_output(cfg)
 
 
-def test_quality_control_input():
-    input_dir = Path().resolve().joinpath("tests", "data", "ds000201-der")
-    output_dir = input_dir.joinpath("derivatives")
-
-    rm_dir(output_dir)
+def test_quality_control_input(tmp_path):
+    input_dir = Path("tests") / "data" / "ds000201-der"
+    output_dir = tmp_path / "derivatives"
 
     cfg = Config(
         input_dir,
@@ -148,8 +146,6 @@ def test_quality_control_input():
 
     quality_control_input(cfg)
 
-    rm_dir(output_dir)
-
 
 def test_perform_quality_control():
     create_basic_json()