change suffix to timeseries

cpp-lln-lab · Aug 11, 2024 · f628315 · f628315
1 parent 2854e2b
commit f628315
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Showing 4 changed files with 5 additions and 7 deletions.
diff --git a/bidsmreye/config/config_bidsname.json b/bidsmreye/config/config_bidsname.json
@@ -1,8 +1,8 @@
 {
     "mask": "sub-{subject}/[ses-{session}]/func/sub-{subject}[_ses-{session}]_task-{task}[_acq-{acquisition}][_ce-{ce}][_rec-{rec}][_dir-{dir}][_run-{run}][_space-{space}][_res-{res}][_den-{den}]_desc-eye_mask.p",
     "report": "sub-{subject}/[ses-{session}]/figures/sub-{subject}[_ses-{session}]_task-{task}[_acq-{acquisition}][_ce-{ce}][_rec-{rec}][_dir-{dir}][_run-{run}][_space-{space}][_res-{res}][_den-{den}]_desc-eye_report.html",
-    "no_label_bold": "sub-{subject}/[ses-{session}]/func/sub-{subject}[_ses-{session}]_task-{task}[_acq-{acquisition}][_ce-{ce}][_rec-{rec}][_dir-{dir}][_run-{run}][_space-{space}][_res-{res}][_den-{den}]_desc-eye_bold.npz",
-    "no_label_json": "sub-{subject}/[ses-{session}]/func/sub-{subject}[_ses-{session}]_task-{task}[_acq-{acquisition}][_ce-{ce}][_rec-{rec}][_dir-{dir}][_run-{run}][_space-{space}][_res-{res}][_den-{den}]_desc-eye_bold.json",
+    "no_label_bold": "sub-{subject}/[ses-{session}]/func/sub-{subject}[_ses-{session}]_task-{task}[_acq-{acquisition}][_ce-{ce}][_rec-{rec}][_dir-{dir}][_run-{run}][_space-{space}][_res-{res}][_den-{den}]_desc-eye_timeseries.npz",
+    "no_label_json": "sub-{subject}/[ses-{session}]/func/sub-{subject}[_ses-{session}]_task-{task}[_acq-{acquisition}][_ce-{ce}][_rec-{rec}][_dir-{dir}][_run-{run}][_space-{space}][_res-{res}][_den-{den}]_desc-eye_timeseries.json",
     "confounds_tsv": "sub-{subject}/[ses-{session}]/func/sub-{subject}[_ses-{session}]_task-{task}[_acq-{acquisition}][_ce-{ce}][_rec-{rec}][_dir-{dir}][_run-{run}][_space-{space}]_desc-{desc}_eyetrack.tsv",
     "confounds_json": "sub-{subject}/[ses-{session}]/func/sub-{subject}[_ses-{session}]_task-{task}[_acq-{acquisition}][_ce-{ce}][_rec-{rec}][_dir-{dir}][_run-{run}][_space-{space}]_desc-{desc}_eyetrack.json",
     "confounds_html": "sub-{subject}/[ses-{session}]/figures/sub-{subject}[_ses-{session}]_task-{task}[_acq-{acquisition}][_ce-{ce}][_rec-{rec}][_dir-{dir}][_run-{run}][_space-{space}]_desc-{desc}_eyetrack.html",

diff --git a/bidsmreye/config/default_filter_file.json b/bidsmreye/config/default_filter_file.json
@@ -11,12 +11,12 @@
     },
     "no_label_bold": {
         "desc": "eye",
-        "suffix": "^bold$$",
+        "suffix": "^timeseries$$",
         "extension": "npz"
     },
     "no_label_bold_json": {
         "desc": "eye",
-        "suffix": "^bold$$",
+        "suffix": "^timeseries$$",
         "extension": "json"
     },
     "eyetrack": {

diff --git a/bidsmreye/visualize.py b/bidsmreye/visualize.py
@@ -69,8 +69,6 @@ def collect_group_qc_data(cfg: Config) -> pd.DataFrame | None:
         with open(file.path) as f:
             data = json.loads(f.read())
 
-        print(data)
-
         df = pd.json_normalize(data)
         df["filename"] = Path(file.path).name
         df["subject"] = entities["subject"]

diff --git a/docs/source/CHANGELOG.md b/docs/source/CHANGELOG.md
@@ -27,7 +27,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Changed
 
-* [ENH] Output filenames of the prepare step has been changed to use the `bold` suffix and the output of the `generalize` step now include the name of the Deepmreye model used to compute them @Remi-Gau in https://github.com/cpp-lln-lab/bidsMReye/pull/232
+* [ENH] Output filenames of the prepare step has been changed to use the `timeseries` suffix and the output of the `generalize` step now include the name of the Deepmreye model used to compute them @Remi-Gau in https://github.com/cpp-lln-lab/bidsMReye/pull/232
 
 ### Deprecated