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Merge pull request #27 from cpp-lln-lab/dependabot/submodules/lib/nig…
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Bump lib/nighres from `ea6dd98` to `5d8901e`
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@Remi-Gau
Remi-Gau authored Nov 4, 2024
2 parents b4b5211 + b94500d commit 075fc33
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion lib/nighres
Submodule nighres updated 79 files
+3 −3 build.sh
+1 −1 build_local_nighresjava.sh
+1 −1 doc/developers/wrapping_cbstools.rst
+9 −9 nighres/brain/extract_brain_region.py
+4 −4 nighres/brain/intensity_based_skullstripping.py
+4 −4 nighres/brain/mgdm_segmentation.py
+1 −1 nighres/brain/mp2rage_dura_estimation.py
+4 −4 nighres/brain/mp2rage_skullstripping.py
+8 −8 nighres/cortex/cruise_cortex_extraction.py
+1 −1 nighres/filtering/filter_ridge_structures.py
+9 −9 nighres/filtering/multiscale_vessel_filter.py
+5 −5 nighres/filtering/recursive_ridge_diffusion.py
+2 −2 nighres/filtering/total_variation_filtering.py
+1 −0 nighres/intensity/__init__.py
+3 −3 nighres/intensity/background_estimation.py
+4 −4 nighres/intensity/boundary_sharpness.py
+4 −4 nighres/intensity/flash_t2s_fitting.py
+1 −1 nighres/intensity/intensity_propagation.py
+115 −0 nighres/intensity/intensity_shape_operator.py
+4 −4 nighres/intensity/lcat_denoising.py
+4 −4 nighres/intensity/lcpca_denoising.py
+5 −5 nighres/intensity/mp2rage_t1_mapping.py
+1 −1 nighres/intensity/mp2rageme_pd_mapping.py
+1 −1 nighres/intensity/phase_unwrapping.py
+5 −5 nighres/intensity/t2s_optimal_combination.py
+28 −5 nighres/io/io_mesh.py
+1 −1 nighres/laminar/laminar_iterative_smoothing.py
+1 −1 nighres/laminar/laminar_regional_approximation.py
+1 −1 nighres/laminar/profile_averaging.py
+2 −2 nighres/laminar/profile_meshing.py
+1 −1 nighres/laminar/profile_sampling.py
+2 −2 nighres/laminar/volumetric_layering.py
+2 −2 nighres/microscopy/directional_line_clustering.py
+3 −3 nighres/microscopy/linear_fiber_interpolation.py
+54 −11 nighres/microscopy/linear_fiber_mapping.py
+3 −3 nighres/microscopy/linear_fiber_scaling.py
+1 −1 nighres/microscopy/linear_fiber_vector_averaging.py
+1 −1 nighres/microscopy/linear_fiber_vector_estimation.py
+2 −2 nighres/microscopy/mgdm_cells.py
+1 −1 nighres/microscopy/shape_tensor_matching.py
+1 −1 nighres/microscopy/stack_intensity_mapping.py
+1 −1 nighres/microscopy/stack_intensity_regularisation.py
+19 −11 nighres/parcellation/massp.py
+64 −0 nighres/parcellation/massp_2p0-label-list.txt
+2 −2 nighres/parcellation/parcellation_smoothing.py
+3 −3 nighres/parcellation/super_voxels.py
+2 −0 nighres/registration/__init__.py
+20 −6 nighres/registration/apply_coordinate_mappings.py
+127 −0 nighres/registration/flip_mapping.py
+400 −0 nighres/registration/focused_antspy.py
+0 −1 nighres/segmentation/__init__.py
+2 −2 nighres/segmentation/competing_probability_diffusion.py
+26 −313 nighres/segmentation/conditional_shape.py
+3 −3 nighres/segmentation/fuzzy_cmeans.py
+2 −2 nighres/shape/intrinsic_coordinates.py
+1 −1 nighres/shape/levelset_fusion.py
+3 −3 nighres/shape/levelset_thickness.py
+2 −2 nighres/shape/simple_skeleton.py
+3 −3 nighres/shape/spectral_embedding.py
+2 −2 nighres/shape/spectral_matrix_embedding.py
+24 −4 nighres/shape/spectral_mesh_embedding.py
+12 −8 nighres/shape/spectral_voxel_embedding.py
+2 −2 nighres/shape/topology_correction.py
+1 −1 nighres/statistics/segmentation_statistics.py
+1 −0 nighres/surface/__init__.py
+4 −4 nighres/surface/levelset_curvature.py
+2 −2 nighres/surface/levelset_to_mesh.py
+139 −0 nighres/surface/levelsets_to_mesh_connector.py
+1 −1 nighres/surface/mesh_data_to_volume.py
+24 −24 nighres/surface/mesh_label_distances.py
+1 −1 nighres/surface/mesh_to_levelset.py
+6 −4 nighres/surface/parcellation_to_meshes.py
+1 −1 nighres/surface/probability_to_levelset.py
+2 −2 nighres/surface/probability_to_mesh.py
+3 −3 nighres/surface/surface_inflation.py
+6 −6 nighres/surface/surface_mesh_mapping.py
+9 −9 nighres/surface/surface_som_mapping.py
+4 −4 nighres/surface/volume_som_mapping.py
+6 −6 setup.cfg

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