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| Original file line number | Diff line number | Diff line change |
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| % (C) Copyright 2024 bidspm developers | ||
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| function test_suite = test_bidsRFX_3_groups %#ok<*STOUT> | ||
| try % assignment of 'localfunctions' is necessary in Matlab >= 2016 | ||
| test_functions = localfunctions(); %#ok<*NASGU> | ||
| catch % no problem; early Matlab versions can use initTestSuite fine | ||
| end | ||
| initTestSuite; | ||
| end | ||
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| function test_bidsRFX_one_way_anova_contrast() | ||
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| opt = setOptions('3_groups', '', 'pipelineType', 'stats'); | ||
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| opt.model.bm = BidsModel('file', opt.model.file); | ||
| opt.verbosity = 0; | ||
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| nodeName = 'between_groups'; | ||
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| matlabbatch = bidsRFX('contrasts', opt, 'nodeName', nodeName); | ||
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| contrastName = 'VisMot_gt_VisStat'; | ||
| rfxDir = getRFXdir(opt, nodeName, contrastName, '1WayANOVA'); | ||
| assertEqual(fileparts(matlabbatch{1}.spm.stats.con.spmmat{1}), rfxDir); | ||
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| assertEqual(numel(matlabbatch{1}.spm.stats.con.consess), 2); | ||
| assertEqual(matlabbatch{1}.spm.stats.con.consess{1}.tcon.name, 'relative_gt_ctrl'); | ||
| assertEqual(matlabbatch{1}.spm.stats.con.consess{1}.tcon.convec, [0; -1; 1]); | ||
| assertEqual(matlabbatch{1}.spm.stats.con.consess{2}.tcon.name, 'blind_gt_relative'); | ||
| assertEqual(matlabbatch{1}.spm.stats.con.consess{2}.tcon.convec, [-1; 0; 1]); | ||
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| contrastName = 'VisStat_gt_VisMot'; | ||
| rfxDir = getRFXdir(opt, nodeName, contrastName, '1WayANOVA'); | ||
| assertEqual(fileparts(matlabbatch{2}.spm.stats.con.spmmat{1}), rfxDir); | ||
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| assertEqual(numel(matlabbatch{2}.spm.stats.con.consess), 2); | ||
| assertEqual(matlabbatch{1}.spm.stats.con.consess{1}.tcon.name, 'relative_gt_ctrl'); | ||
| assertEqual(matlabbatch{2}.spm.stats.con.consess{1}.tcon.convec, [0; -1; 1]); | ||
| assertEqual(matlabbatch{1}.spm.stats.con.consess{2}.tcon.name, 'blind_gt_relative'); | ||
| assertEqual(matlabbatch{2}.spm.stats.con.consess{2}.tcon.convec, [-1; 0; 1]); | ||
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| end | ||
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| function test_bidsRFX_one_way_anova_results() | ||
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| opt = setOptions('3_groups', '', 'pipelineType', 'stats'); | ||
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| opt.model.bm = BidsModel('file', opt.model.file); | ||
| opt.verbosity = 3; | ||
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| nodeName = 'between_groups'; | ||
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| contrastName = 'VisMot_gt_VisStat'; | ||
| rfxDir = getRFXdir(opt, nodeName, contrastName, '1WayANOVA'); | ||
| spm_mkdir(rfxDir); | ||
| xCon(1) = struct('name', 'relative_gt_ctrl'); | ||
| xCon(2) = struct('name', 'blind_gt_relative'); | ||
| SPM = struct('nscan', 10, 'xCon', xCon); | ||
| save(fullfile(rfxDir, 'SPM.mat'), 'SPM'); | ||
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| contrastName = 'VisStat_gt_VisMot'; | ||
| rfxDir = getRFXdir(opt, nodeName, contrastName, '1WayANOVA'); | ||
| spm_mkdir(rfxDir); | ||
| % here we switch the order of the contrast in the SPM.mat | ||
| % to make sure the batch setting picks up the correct ones. | ||
| xCon(2) = struct('name', 'relative_gt_ctrl'); | ||
| xCon(1) = struct('name', 'blind_gt_relative'); | ||
| SPM = struct('nscan', 10, 'xCon', xCon); | ||
| save(fullfile(rfxDir, 'SPM.mat'), 'SPM'); | ||
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| matlabbatch = bidsResults(opt, 'nodeName', nodeName); | ||
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| assertEqual(length(matlabbatch), 4); | ||
| assertEqual(matlabbatch{1}.result.name, 'VisMotGtVisStat - relative_gt_ctrl'); | ||
| assertEqual(matlabbatch{1}.spm.stats.results.conspec.contrasts, 1); | ||
| assertEqual(matlabbatch{2}.result.name, 'VisStatGtVisMot - relative_gt_ctrl'); | ||
| assertEqual(matlabbatch{2}.spm.stats.results.conspec.contrasts, 2); | ||
| assertEqual(matlabbatch{3}.result.name, 'VisMotGtVisStat - blind_gt_relative'); | ||
| assertEqual(matlabbatch{3}.spm.stats.results.conspec.contrasts, 2); | ||
| assertEqual(matlabbatch{4}.result.name, 'VisStatGtVisMot - blind_gt_relative'); | ||
| assertEqual(matlabbatch{4}.spm.stats.results.conspec.contrasts, 1); | ||
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| end | ||
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| function value = batchSummary(matlabbatch) | ||
| value = {}; | ||
| for i = 1:numel(matlabbatch) | ||
| field = fieldnames(matlabbatch{i}.spm); | ||
| value{i, 1} = field{1}; %#ok<*AGROW> | ||
| field = fieldnames(matlabbatch{i}.spm.(value{i, 1})); | ||
| value{i, 2} = field{1}; | ||
| end | ||
| end | ||
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| function value = expectedBatchOrder() | ||
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| value = {'stats', 'factorial_design'; ... | ||
| 'stats', 'fmri_est'; ... | ||
| 'tools', 'MACS'; ... | ||
| 'tools', 'MACS'; ... | ||
| 'stats', 'review'; ... | ||
| 'util', 'print'}; | ||
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| end |