fix default path output create roi

cpp-lln-lab · Jul 13, 2024 · 6671a8f · 6671a8f
1 parent d5f5c20
commit 6671a8f
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Showing 3 changed files with 8 additions and 2 deletions.
diff --git a/lib/CPP_ROI b/lib/CPP_ROI
diff --git a/src/bidspm/bidspm.py b/src/bidspm/bidspm.py
@@ -186,7 +186,7 @@ def create_roi(
 ) -> str:
     roi_name = "{ '" + "', '".join(roi_name) + "' }" if roi_name is not None else None  # type: ignore
     if roi_dir is None:
-        roi_dir = Path()
+        roi_dir = output_dir
 
     cmd = generate_cmd(
         bids_dir=bids_dir,

diff --git a/tests/tests_slow/tests_cli/test_bidspm_create_roi.m b/tests/tests_slow/tests_cli/test_bidspm_create_roi.m
@@ -46,6 +46,12 @@ function test_bidsCreateROI_glasser()
          'space', {'IXI549Space'}, ...
          'verbosity', 3);
 
+  assert(exist(fullfile(outputPath, ...
+                        'derivatives', ...
+                        'bidspm-roi', ...
+                        'reports', ...
+                        'create_roi_atlas-glasser_citation.md'), 'file') == 2);
+
   rois = spm_select('FPList', fullfile(outputPath, ...
                                        'derivatives', ...
                                        'bidspm-roi', 'group'), '.*glasser.*_mask\.nii');