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% | ||
% (C) Copyright 2023 bidspm developers | ||
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root_dir = getenv('GITHUB_WORKSPACE'); | ||
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fprintf('\nroot dir is %s\n', root_dir); | ||
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addpath(fullfile(root_dir, 'spm12')); | ||
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cd(fullfile(root_dir, 'demos', 'bayes')); | ||
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run ds000114_run; |
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--- | ||
name: tests bayesian model selection | ||
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# Uses the cron schedule for github actions | ||
# | ||
# https://docs.github.com/en/free-pro-team@latest/actions/reference/events-that-trigger-workflows#scheduled-events | ||
# | ||
# ┌───────────── minute (0 - 59) | ||
# │ ┌───────────── hour (0 - 23) | ||
# │ │ ┌───────────── day of the month (1 - 31) | ||
# │ │ │ ┌───────────── month (1 - 12 or JAN-DEC) | ||
# │ │ │ │ ┌───────────── day of the week (0 - 6 or SUN-SAT) | ||
# │ │ │ │ │ | ||
# │ │ │ │ │ | ||
# │ │ │ │ │ | ||
# * * * * * | ||
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concurrency: | ||
group: ${{ github.workflow }}-${{ github.ref }} | ||
cancel-in-progress: true | ||
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on: | ||
push: | ||
branches: [main] | ||
pull_request: | ||
branches: [main] | ||
schedule: | ||
- cron: 0 0 1,15 * * | ||
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# Allows you to run this workflow manually from the Actions tab | ||
workflow_dispatch: | ||
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jobs: | ||
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tests: | ||
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if: github.repository_owner == 'cpp-lln-lab' | ||
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runs-on: ubuntu-latest | ||
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steps: | ||
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- name: Install Node | ||
uses: actions/setup-node@v3 | ||
with: | ||
node-version: 18 | ||
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- name: Install python | ||
uses: actions/setup-python@v4 | ||
with: | ||
python-version: '3.11' | ||
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- name: Install dependencies | ||
run: | | ||
sudo apt-get -y -qq update | ||
sudo apt-get install -y git-annex | ||
python -m pip install --upgrade pip setuptools | ||
pip install datalad | ||
- name: Get data | ||
run: make -C demos/bayes data_ds000114 | ||
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- name: Clone bidspm | ||
uses: actions/checkout@v3 | ||
with: | ||
submodules: recursive | ||
fetch-depth: 0 | ||
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- name: Install validators | ||
run: make install | ||
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- name: Install SPM | ||
run: | | ||
git clone https://github.com/spm/spm12.git --depth 1 | ||
- name: Copy Macs toolbox to SPM inputs_folder | ||
run: cp -rv lib/MACS spm12/toolbox/MACS | ||
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- name: Install MATLAB | ||
uses: matlab-actions/setup-matlab@v1.2.4 | ||
with: | ||
release: R2022b | ||
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- name: Run system tests MATLAB BMS | ||
uses: matlab-actions/run-command@v1.2.1 | ||
with: | ||
command: cd(fullfile(getenv('GITHUB_WORKSPACE'), '.github', 'workflows')); run system_tests_bms}; |
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