Merge branch 'wip'

WIP/create_boutiques_descriptor.py

@@ -0,0 +1,15 @@
+import boutiques.creator as bc
+
+from bidspm.parsers import common_parser
+
+newDescriptor = bc.CreateDescriptor(common_parser(), execname="bidspm")
+
+newDescriptor.save("my-new-descriptor.json")
+
+# args = common_parser.parse_args()
+# invoc = newDescriptor.createInvocation(args)
+
+# # Then, if you want to save them to a file...
+# import json
+# with open('my-inputs.json', 'w') as fhandle:
+#     fhandle.write(json.dumps(invoc, indent=4))

WIP/write_model_graph.py

@@ -0,0 +1,11 @@
+from pathlib import Path
+
+from bids.modeling.statsmodels import BIDSStatsModelsGraph
+
+graph = BIDSStatsModelsGraph(
+    layout=Path("/home/remi/github/cpp-lln-lab/bidspm/demos/MoAE/inputs/raw"),
+    model="/home/remi/github/cpp-lln-lab/bidspm/demos/openneuro/models/model-narps_desc-U26C_smdl.json",
+)
+
+
+graph.write_graph()

src/bidspm/parsers.py

@@ -472,7 +472,7 @@ def _add_roi_atlas(parser: ArgumentParser) -> ArgumentParser:
         type=str,
         nargs=1,
         default="neuromorphometrics",
-        choices=SUPPORTED_ATLASES,
+        choices=list(SUPPORTED_ATLASES),
     )
     return parser