Updates README, NEWS, and CITATION

README.Rmd

@@ -1,6 +1,9 @@
 ---
 title : "<img src='tools/images/papaja_hex.png' align='right' height='150' />papaja: Prepare APA Journal Articles<br />with R Markdown"
 output: github_document
+  # github_document:
+  #   toc: true
+  #   toc_depth: 2
 ---
 
 ```{r include = FALSE}
@@ -12,6 +15,8 @@ if(!requireNamespace("depgraph", quietly = TRUE)) remotes::install_github("crsh/
 
 [![CRAN/METACRAN](https://img.shields.io/cran/v/papaja?label=CRAN&logo=r)]( https://cran.r-project.org/package=papaja) [![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active) ![GitHub last commit (main)](https://img.shields.io/github/last-commit/crsh/papaja/main?label=Last%20commit&logo=github) [![R-CMD-check](https://github.com/crsh/papaja/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/crsh/papaja/actions/workflows/R-CMD-check.yaml) [![codecov](https://codecov.io/gh/crsh/papaja/branch/master/graph/badge.svg)](https://app.codecov.io/gh/crsh/papaja) [![GitHub bug issues](https://img.shields.io/github/issues/crsh/papaja/bug?label=Bugs&logo=github)](https://github.com/crsh/papaja/issues?q=is%3Aopen+is%3Aissue+label%3Abug) [![StackOverflow questions](https://img.shields.io/stackexchange/stackoverflow/t/papaja?label=Questions&logo=stackoverflow)](https://stackoverflow.com/questions/tagged/papaja)
 
+**Sections** [Example](#example) | [Installation](#installation) | [Usage](#usage) | [Getting help](#getting-help) | [Citation](#citation) | [papaja in the wild](#papaja-in-the-wild) | [Computational reproducibility](#computational-reproducibility) | [Contribute](#contribute) | [Related R packages](#related-r-packages) | [Package dependencies](#package-dependencies)
+
 **papaja** is an [award-winning](https://improvingpsych.org/mission/awards/) R package that facilitates creating computationally reproducible, submission-ready manuscripts which conform to the American Psychological Association (APA) manuscript guidelines (6th Edition).
 **papaja** provides
 

README.md

@@ -17,6 +17,13 @@ issues](https://img.shields.io/github/issues/crsh/papaja/bug?label=Bugs&logo=git
 [![StackOverflow
 questions](https://img.shields.io/stackexchange/stackoverflow/t/papaja?label=Questions&logo=stackoverflow)](https://stackoverflow.com/questions/tagged/papaja)
 
+**Sections** [Example](#example) \| [Installation](#installation) \|
+[Usage](#usage) \| [Getting help](#getting-help) \|
+[Citation](#citation) \| [papaja in the wild](#papaja-in-the-wild) \|
+[Computational reproducibility](#computational-reproducibility) \|
+[Contribute](#contribute) \| [Related R packages](#related-r-packages)
+\| [Package dependencies](#package-dependencies)
+
 **papaja** is an
 [award-winning](https://improvingpsych.org/mission/awards/) R package
 that facilitates creating computationally reproducible, submission-ready
@@ -308,6 +315,7 @@ your BibTeX file:
   year = {2024},
   note = {R package version 0.1.3},
   url = {https://github.com/crsh/papaja},
+  doi = {10.32614/CRAN.package.papaja},
 }
 ```
 

inst/CITATION

@@ -21,4 +21,5 @@ bibentry(
   , year = year
   , note = note
   , url = meta$URL
+  , doi = "10.32614/CRAN.package.papaja"
 )

inst/NEWS.md

@@ -1,19 +1,40 @@
-# Upcoming release
+# papaja 0.1.3
+
+### New functions
 
-- For ANOVA methods, *MSE*s are again returned if requested by the user (reported by @Sashpta, [#562](https://github.com/crsh/papaja/issues/562)). The global default for reporting *MSE*s now depends on the [**effectsize**](https://CRAN.r-project.org/package=effectsize) package: If **effectsize** is installed, the default for reporting *MSE*s is `FALSE`, if **effectsize** is not installed, the default is `TRUE`.
-- Added `apa_print()` support for analysis of deviance from the **car** package.
 - Added new plotting function `apa_violinplot()` for violin plots.
-- Accordingly, `apa_factorial_plot()` gained arguments `args_violins` and `args_density`.
+    - Accordingly, `apa_factorial_plot()` gained arguments `args_violins` and `args_density`.
 
 ### Existing functions
 
 - `generate_author_yml()`
-    - Now preserves affiliation order for each author (see #569).
-- `apa_print()` now supports output from `stats::binom.test()` (see [#576](https://github.com/crsh/papaja/issues/576)).
+    - Now preserves affiliation order for each author (see #569, @conig).
+- `apa_print()`
+    - now returns an output object that is consistent with other output from `apa_print()`
+        - The table element does not have row names.
+        - Term names are now consistently constructed with `sanitize_terms()`.
+    - now supports output from `stats::binom.test()` (see [#576](https://github.com/crsh/papaja/issues/576)).
+    - now supports analysis of deviance from the **car** package.
+    - For ANOVA methods, *MSE*s are again returned if requested by the user (reported by @Sashpta, [#562](https://github.com/crsh/papaja/issues/562)). The global default for reporting *MSE*s now depends on the [**effectsize**](https://CRAN.r-project.org/package=effectsize) package: If **effectsize** is installed, the default for reporting *MSE*s is `FALSE`, if **effectsize** is not installed, the default is `TRUE`.
+- `apa_*plot()` functions have gained a new argument `set_par`.
 - `sanitize_terms()` now also replaces multiple consecutive underscores with a single underscore and removes leading underscores. This affects term names in output from `apa_print()`.
-- `apa_print()` now returns an output object that is consistent with other output from `apa_print()`
-  - The table element does not have row names.
-  - Term names are now consistently constructed with `sanitize_terms()`.
+- `cite_r()`
+    - gained the `lang` argument to specify the language of to-be-generated text.
+
+### Misc
+
+- Several improvements to the documentation
+
+### Templates
+
+- APA 6
+    - DOCX
+        - Fixed bugs in table and figure numbering
+    - New YAML front matter flag `doi_citations` to use DOI-based citations via the [`doi2cite`](https://github.com/korintje/pandoc-doi2cite/blob/main/doi2cite.lua) filter, see [**rmdfiltr** vignette](https://cran.r-project.org/web/packages/rmdfiltr/vignettes/doi2cite.html).
+- Revision letter
+    - LaTeX error `LaTeX Error: Lonely \item--perhaps a missing list environment` is now fixed (reported by @cjvanlissa, [#587](https://github.com/crsh/papaja/issues/587); fixed by @jvcasillas, [#593](https://github.com/crsh/papaja/pull/593))
+- Updated to latest version of CSL files
+
 
 # papaja 0.1.2
 

inst/WORDLIST

@@ -5,6 +5,7 @@ Anova
 BFBayesFactor
 BFBayesFactorList
 BFBayesFactorTop
+BCP
 Bakeman
 CMD
 CSL
@@ -122,3 +123,4 @@ wsci
 xtable
 yaml
 yml
+rempsyc