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fix .coveragerc

fix .coveragerc #53

# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
name: Python package
on:
push:
branches: [ "master" ]
pull_request:
branches: [ "master" ]
jobs:
build:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: ["3.9", "3.10", "3.11"]
steps:
- uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v3
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
python -m pip install flake8 pytest
python -m pip install coverage
python -m pip install -U pytest
python -m pip install --upgrade pip setuptools wheel
sudo apt-get install gfortran
python -m pip install scipy==1.11.2
python -m pip install xarray==2024.1.1
python -m pip install numpy==1.24.4
python setup.py develop
- name: Test with pytest
run: |
coverage run -m pytest -k "not output_results"
# Skipped tests/test_output_results.py due to permission issue accessing sample dataset
- name: Upload Coverage to Codecov
run: |
bash <(curl -s https://codecov.io/bash)
- name: Lint with flake8
run: |
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics