Home

Welcome to the MetaSBT wiki!

MetaSBT is a scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees.

This is the content of the wiki:

• Getting started
  • Installing MetaSBT
  • Dependencies
• Available features
  • index: building a reference database
  • boundaries: defining clusters boundaries
  • profile: characterizing genomes and metagenome-assembled genomes
  • update: updating the database
  • report: building the database snapshot report
• Retrieving genomes from NCBI GenBank
• Distributing MetaSBT databases
• Installing MetaSBT databases
• Unlocking quantitative profiling of unknown species with kraken2
• Integrating MetaSBT in Galaxy