added singlecell notebook

cyneuro · Nov 12, 2024 · e5ebc51 · e5ebc51
1 parent 74e866c
commit e5ebc51
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Showing 60 changed files with 14,352 additions and 26 deletions.
diff --git a/examples/singleCell.ipynb b/examples/singleCell.ipynb
diff --git a/examples/single_cell/386049446_fit.json b/examples/single_cell/386049446_fit.json
@@ -0,0 +1,145 @@
+{
+  "passive": [
+    {
+      "ra": 79.9493434509, 
+      "cm": [
+        {
+          "section": "soma", 
+          "cm": 1.0
+        }, 
+        {
+          "section": "axon", 
+          "cm": 1.0
+        }, 
+        {
+          "section": "dend", 
+          "cm": 7.026107672909459
+        }, 
+        {
+          "section": "apic", 
+          "cm": 7.026107672909459
+        }
+      ], 
+      "e_pas": -99.73164367675781
+    }
+  ], 
+  "fitting": [
+    {
+      "junction_potential": -14.0, 
+      "sweeps": [
+        35
+      ]
+    }
+  ], 
+  "conditions": [
+    {
+      "celsius": 34.0, 
+      "erev": [
+        {
+          "ena": 53.0, 
+          "section": "soma", 
+          "ek": -107.0
+        }
+      ], 
+      "v_init": -99.73164367675781
+    }
+  ], 
+  "genome": [
+    {
+      "section": "soma", 
+      "name": "gbar_Im", 
+      "value": 0.0072542922510378935, 
+      "mechanism": "Im"
+    }, 
+    {
+      "section": "soma", 
+      "name": "gbar_Ih", 
+      "value": 2.0724144681988357e-06, 
+      "mechanism": "Ih"
+    }, 
+    {
+      "section": "soma", 
+      "name": "gbar_NaTs", 
+      "value": 0.5459445571987388, 
+      "mechanism": "NaTs"
+    }, 
+    {
+      "section": "soma", 
+      "name": "gbar_Nap", 
+      "value": 0.0013995213534577413, 
+      "mechanism": "Nap"
+    }, 
+    {
+      "section": "soma", 
+      "name": "gbar_K_P", 
+      "value": 0.030706001493332663, 
+      "mechanism": "K_P"
+    }, 
+    {
+      "section": "soma", 
+      "name": "gbar_K_T", 
+      "value": 0.00017661133926769827, 
+      "mechanism": "K_T"
+    }, 
+    {
+      "section": "soma", 
+      "name": "gbar_SK", 
+      "value": 0.00040882303641811332, 
+      "mechanism": "SK"
+    }, 
+    {
+      "section": "soma", 
+      "name": "gbar_Kv3_1", 
+      "value": 0.15353463627045882, 
+      "mechanism": "Kv3_1"
+    }, 
+    {
+      "section": "soma", 
+      "name": "gbar_Ca_HVA", 
+      "value": 0.00021022546615679283, 
+      "mechanism": "Ca_HVA"
+    }, 
+    {
+      "section": "soma", 
+      "name": "gbar_Ca_LVA", 
+      "value": 5.9716218281113955e-06, 
+      "mechanism": "Ca_LVA"
+    }, 
+    {
+      "section": "soma", 
+      "name": "gamma_CaDynamics", 
+      "value": 0.031979282594100863, 
+      "mechanism": "CaDynamics"
+    }, 
+    {
+      "section": "soma", 
+      "name": "decay_CaDynamics", 
+      "value": 262.08498432363001, 
+      "mechanism": "CaDynamics"
+    }, 
+    {
+      "section": "soma", 
+      "name": "g_pas", 
+      "value": 0.00027723172826344273, 
+      "mechanism": ""
+    }, 
+    {
+      "section": "axon", 
+      "name": "g_pas", 
+      "value": 0.00055299448569759825, 
+      "mechanism": ""
+    }, 
+    {
+      "section": "dend", 
+      "name": "g_pas", 
+      "value": 3.0586536625559199e-06, 
+      "mechanism": ""
+    }, 
+    {
+      "section": "apic", 
+      "name": "g_pas", 
+      "value": 0.00012512712410094184, 
+      "mechanism": ""
+    }
+  ]
+}