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Single-cell identity definition using random forest modelling and recursive feature elimination

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czbiohub-sf/scRFE

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scRFE (pronounced 'surf')

scRFE (single-cell identity definition using random forests and recursive feature elimination) is a Python package that uses a one versus all random forest classifier with recursive feature elimination to identify the set of genes necessary and sufficient to describe the different features of your single-cell RNA sequencing data.

Installation and Documentation

Use the package manager pip to install scRFE for python.

pip install scRFE

Find scRFE at https://pypi.org/project/scRFE/

Find our documentation at https://scrfe.readthedocs.io/en/latest/

Contributing

Pull requests are welcome. For major changes, please open an issue first to discuss what you would like to change.

License

MIT