NAMD and Colvars input files for molecular dynamics (MD) based protein structure refinement during CASP14. The protocol for the most part is an adaptation of the refinement method developed by Lim Heo, Collin F. Arbour and Prof. Michael Feig. Please refer to their published work for the theoretical framework: https://doi.org/10.1002/prot.25759
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MD based protein structure refinement
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