reduced redundant code when running single h5 file #294
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| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: tests | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.10.14 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.10.14 | |
| ### tests using conda | |
| # - name: Add conda to system path | |
| # run: | | |
| # # $CONDA is an environment variable pointing to the root of the miniconda directory | |
| # echo $CONDA/bin >> $GITHUB_PATH | |
| # - name: Install dependencies | |
| # run: | | |
| # conda config --add channels conda-forge | |
| # conda env update --file requirements.txt --name base | |
| # - name: Lint with flake8 | |
| # run: | | |
| # conda install flake8 | |
| # # stop the build if there are Python syntax errors or undefined names | |
| # flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| # - name: Test with pytest | |
| # run: | | |
| # conda install pytest | |
| # pytest wedap/tests | |
| ### tests using pip | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install flake8 pytest pytest-cov | |
| # gooey has extra dependencies not installed by pip so skip gooey | |
| #pip install numpy h5py matplotlib scipy tqdm | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| run: | | |
| pytest wedap/tests/ | |
| pytest mdap/tests/ |