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Auto-generated via {sandpaper}
Source  : 2defd09
Branch  : main
Author  : Jason Williams <JasonJWilliamsNY@gmail.com>
Time    : 2024-03-13 15:42:17 +0000
Message : Merge pull request #259 from naupaka/main

Add callout differentiating %in% and == to address #258

01-r-basics.md

@@ -809,6 +809,23 @@ c("ACTN3","APOA5") %in% snp_genes
 [1] TRUE TRUE
 ```
 
+:::::::::::::::::::::::::::::::::::::::::  callout
+
+## Tip: What's the difference between the `%in% and the `==` operators?
+
+The `%in%` operator is used to test if the elements of a vector are
+present in another vector. In the example above, if both "ACTN3" and "APOA5" are in 
+the vector `snp_genes`, then R will return `TRUE TRUE` since they are both present. 
+If "ACTN3" is but "APOA5" is not in `snp_genes`, then R will return `TRUE FALSE`. The `==` operator
+is used to test if two vectors are exactly equal. For example, if you wanted to know if the vector `c(1, 2, 3)`
+was equal to the vector `c(1, 2, 3)`, you could use the `==` operator. One trick people sometimes
+use is to check a single value against a vector with the `==` operator. For example, if you wanted to know
+if the value `1` was in the vector `c(1, 2, 3)`, you could use the expression `1 == c(1, 2, 3)`. This would
+return `TRUE FALSE FALSE` since the value `1` is only in the first position of the vector `c(1, 2, 3)`. Note that
+`c(1, 2) == c(1, 2, 3)` will return an error since the vectors are of different lengths.
+
+::::::::::::::::::::::::::::::::::::::::::::::::::
+
 :::::::::::::::::::::::::::::::::::::::  challenge
 
 ## Review Exercise 1

config.yaml

@@ -0,0 +1,88 @@
+#------------------------------------------------------------
+# Values for this lesson.
+#------------------------------------------------------------
+
+# Which carpentry is this (swc, dc, lc, or cp)?
+# swc: Software Carpentry
+# dc: Data Carpentry
+# lc: Library Carpentry
+# cp: Carpentries (to use for instructor training for instance)
+# incubator: The Carpentries Incubator
+carpentry: 'dc'
+
+# Overall title for pages.
+title: 'Intro to R and RStudio for Genomics'
+
+# Date the lesson was created (YYYY-MM-DD, this is empty by default)
+created: '2018-03-12'
+
+# Comma-separated list of keywords for the lesson
+keywords: 'software, data, lesson, The Carpentries'
+
+# Life cycle stage of the lesson
+# possible values: pre-alpha, alpha, beta, stable
+life_cycle: 'beta'
+
+# License of the lesson materials (recommended CC-BY 4.0)
+license: 'CC-BY 4.0'
+
+# Link to the source repository for this lesson
+source: 'https://github.com/datacarpentry/genomics-r-intro'
+
+# Default branch of your lesson
+branch: 'main'
+
+# Who to contact if there are any issues
+contact: 'team@carpentries.org'
+
+# Navigation ------------------------------------------------
+#
+# Use the following menu items to specify the order of
+# individual pages in each dropdown section. Leave blank to
+# include all pages in the folder.
+#
+# Example -------------
+#
+# episodes:
+# - introduction.md
+# - first-steps.md
+#
+# learners:
+# - setup.md
+#
+# instructors:
+# - instructor-notes.md
+#
+# profiles:
+# - one-learner.md
+# - another-learner.md
+
+# Order of episodes in your lesson
+episodes: 
+- 00-introduction.Rmd
+- 01-r-basics.Rmd
+- 02-data-prelude.Rmd
+- 03-basics-factors-dataframes.Rmd
+- 04-bioconductor-vcfr.Rmd
+- 05-dplyr.Rmd
+- 06-data-visualization.Rmd
+- 07-r-help.Rmd
+
+# Information for Learners
+learners: 
+
+# Information for Instructors
+instructors: 
+
+# Learner Profiles
+profiles: 
+
+# Customisation ---------------------------------------------
+#
+# This space below is where custom yaml items (e.g. pinning
+# sandpaper and varnish versions) should live
+
+
+url: 'https://datacarpentry.github.io/genomics-r-intro'
+analytics: carpentries
+lang: en

md5sum.txt

@@ -4,7 +4,7 @@
 "config.yaml" "b91cd97fa3b408bd1ac0a00e67ab3219" "site/built/config.yaml" "2024-03-12"
 "index.md" "7f9c30e6487338a0c3f8ecc4018873ab" "site/built/index.md" "2024-03-12"
 "episodes/00-introduction.Rmd" "0703d3a4fb9cd0dfc4d54c78dea6fee6" "site/built/00-introduction.md" "2024-03-12"
-"episodes/01-r-basics.Rmd" "cf0ee85e99104da0316a085faf32ae21" "site/built/01-r-basics.md" "2024-03-12"
+"episodes/01-r-basics.Rmd" "0ae61163db8e5696c89db014882eb315" "site/built/01-r-basics.md" "2024-03-13"
 "episodes/02-data-prelude.Rmd" "ab2b1fd3cdaae919f9e409f713a0a8ad" "site/built/02-data-prelude.md" "2024-03-12"
 "episodes/03-basics-factors-dataframes.Rmd" "cab7ab3fe53143558e6af3eee5774d35" "site/built/03-basics-factors-dataframes.md" "2024-03-12"
 "episodes/04-bioconductor-vcfr.Rmd" "10eb69b4697d7ecb9695d36c0d974208" "site/built/04-bioconductor-vcfr.md" "2024-03-12"