From 9958afefa026ba97c191e33780510d192547c82f Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Tue, 9 Jan 2024 00:20:42 +0000
Subject: [PATCH] site deploy

Auto-generated via {sandpaper}
Source  : b0946d63571000f3a95310efa0abfbd55384a7a5
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2023-12-13 17:10:37 +0000
Message : markdown source builds

Auto-generated via {sandpaper}
Source  : ce9122ecc7b7f235468be4a9e0f6095576cf6d0a
Branch  : main
Author  : Naupaka Zimmerman <naupaka@gmail.com>
Time    : 2023-12-13 17:09:20 +0000
Message : Merge pull request #249 from ytakemon/iss_149

addresses why read.csv calls read.table in help doc #149
---
 00-introduction.html                         |  2 +-
 01-r-basics.html                             |  2 +-
 02-data-prelude.html                         |  2 +-
 03-basics-factors-dataframes.html            |  2 +-
 04-bioconductor-vcfr.html                    |  2 +-
 05-dplyr.html                                | 14 ++++++------
 06-data-visualization.html                   | 10 ++++----
 07-r-help.html                               |  2 +-
 404.html                                     |  4 ++--
 CODE_OF_CONDUCT.html                         |  2 +-
 LICENSE.html                                 |  2 +-
 aio.html                                     | 24 ++++++++++----------
 discuss.html                                 |  2 +-
 images.html                                  |  4 ++--
 index.html                                   |  4 ++--
 instructor-notes.html                        |  4 ++--
 instructor/00-introduction.html              |  2 +-
 instructor/01-r-basics.html                  |  2 +-
 instructor/02-data-prelude.html              |  2 +-
 instructor/03-basics-factors-dataframes.html |  2 +-
 instructor/04-bioconductor-vcfr.html         |  2 +-
 instructor/05-dplyr.html                     | 14 ++++++------
 instructor/06-data-visualization.html        | 10 ++++----
 instructor/07-r-help.html                    |  2 +-
 instructor/404.html                          |  4 ++--
 instructor/CODE_OF_CONDUCT.html              |  2 +-
 instructor/LICENSE.html                      |  2 +-
 instructor/aio.html                          | 24 ++++++++++----------
 instructor/discuss.html                      |  2 +-
 instructor/images.html                       |  4 ++--
 instructor/index.html                        |  4 ++--
 instructor/instructor-notes.html             |  4 ++--
 instructor/key-points.html                   |  4 ++--
 instructor/profiles.html                     |  4 ++--
 instructor/reference.html                    |  2 +-
 key-points.html                              |  4 ++--
 pkgdown.yml                                  |  2 +-
 profiles.html                                |  4 ++--
 reference.html                               |  2 +-
 39 files changed, 93 insertions(+), 93 deletions(-)

diff --git a/00-introduction.html b/00-introduction.html
index 892df934..d990eee8 100644
--- a/00-introduction.html
+++ b/00-introduction.html
@@ -979,7 +979,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/00-introduction.html",
   "dateCreated": "2018-03-12",
   "dateModified": "2023-12-13",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/01-r-basics.html b/01-r-basics.html
index 86588202..ff84cd8e 100644
--- a/01-r-basics.html
+++ b/01-r-basics.html
@@ -1651,7 +1651,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/01-r-basics.html",
   "dateCreated": "2018-03-12",
   "dateModified": "2023-12-13",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/02-data-prelude.html b/02-data-prelude.html
index b716fd35..37ca1267 100644
--- a/02-data-prelude.html
+++ b/02-data-prelude.html
@@ -601,7 +601,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/02-data-prelude.html",
   "dateCreated": "2018-03-12",
   "dateModified": "2023-12-13",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/03-basics-factors-dataframes.html b/03-basics-factors-dataframes.html
index 237139d1..a07f3bcc 100644
--- a/03-basics-factors-dataframes.html
+++ b/03-basics-factors-dataframes.html
@@ -1892,7 +1892,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/03-basics-factors-dataframes.html",
   "dateCreated": "2018-03-12",
   "dateModified": "2023-12-13",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
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diff --git a/04-bioconductor-vcfr.html b/04-bioconductor-vcfr.html
index 0cf43d47..2331889b 100644
--- a/04-bioconductor-vcfr.html
+++ b/04-bioconductor-vcfr.html
@@ -575,7 +575,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/04-bioconductor-vcfr.html",
   "dateCreated": "2018-03-12",
   "dateModified": "2023-12-13",
-  "datePublished": "2024-01-02"
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 }
 
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diff --git a/05-dplyr.html b/05-dplyr.html
index a6f19936..e686bf38 100644
--- a/05-dplyr.html
+++ b/05-dplyr.html
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 </button>
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 </button>
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@@ -1102,7 +1102,7 @@ <h3 class="callout-title">Exercise: Pipe and filter<a class="anchor" aria-label=
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
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 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
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@@ -1193,7 +1193,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
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-<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
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 <div class="codewrapper sourceCode" id="cb43">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1290,7 +1290,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution6" aria-expanded="false" aria-controls="collapseSolution6">
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 </button>
-<div id="collapseSolution6" class="accordion-collapse collapse" data-bs-parent="#accordionSolution6" aria-labelledby="headingSolution6">
+<div id="collapseSolution6" class="accordion-collapse collapse" aria-labelledby="headingSolution6" data-bs-parent="#accordionSolution6">
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 <div class="codewrapper sourceCode" id="cb49">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1537,7 +1537,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/05-dplyr.html",
   "dateCreated": "2018-03-12",
   "dateModified": "2023-12-13",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/06-data-visualization.html b/06-data-visualization.html
index 4912a503..71070de8 100644
--- a/06-data-visualization.html
+++ b/06-data-visualization.html
@@ -911,7 +911,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
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 <div class="codewrapper sourceCode" id="cb26">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1008,7 +1008,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
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@@ -1057,7 +1057,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3">Show me the solution</h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb33">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1104,7 +1104,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4">Show me the solution</h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb35">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1258,7 +1258,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/06-data-visualization.html",
   "dateCreated": "2018-03-12",
   "dateModified": "2023-12-13",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/07-r-help.html b/07-r-help.html
index 4279b8ca..41c34a5a 100644
--- a/07-r-help.html
+++ b/07-r-help.html
@@ -547,7 +547,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/07-r-help.html",
   "dateCreated": "2018-03-12",
   "dateModified": "2023-12-13",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/404.html b/404.html
index 09e4c666..90aeddac 100644
--- a/404.html
+++ b/404.html
@@ -338,8 +338,8 @@ <h1>Page not found</h1>
   "url": "https://datacarpentry.github.io/genomics-r-intro/404.html",
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/404.html",
   "dateCreated": "2018-03-12",
-  "dateModified": "2024-01-02",
-  "datePublished": "2024-01-02"
+  "dateModified": "2024-01-09",
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index 9f743bc1..95e6d33d 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -354,7 +354,7 @@ <h1>Contributor Code of Conduct</h1>
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   "dateCreated": "2018-03-12",
   "dateModified": "2023-12-13",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
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diff --git a/LICENSE.html b/LICENSE.html
index b53dff79..279a616b 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -405,7 +405,7 @@ <h1>Licenses</h1>
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/LICENSE.html",
   "dateCreated": "2018-03-12",
   "dateModified": "2023-12-13",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
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diff --git a/aio.html b/aio.html
index 9bbc26a0..c1042fa3 100644
--- a/aio.html
+++ b/aio.html
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 </button>
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 <div class="codewrapper sourceCode" id="cb10">
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@@ -4914,7 +4914,7 @@ <h3 class="callout-title">Challenge<em>(continued)</em><a class="anchor" aria-la
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-<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
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@@ -5577,7 +5577,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
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-<div id="collapseSolution6" class="accordion-collapse collapse" data-bs-parent="#accordionSolution6" aria-labelledby="headingSolution6">
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 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
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